Basic Information

Insect: Laothoe populi
Gene Symbol: -
Assembly: GCA_905220505.1
Location: HG992155.1:14865298-14875483[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.035 3.3 9.3 1.6 1 23 376 398 376 398 0.93

2 11 8.9e-07 8.4e-05 23.8 2.5 2 23 405 426 404 426 0.97

3 11 3.2e-05 0.003 18.9 0.4 1 23 432 454 432 454 0.98

4 11 3.3e-05 0.0031 18.8 1.1 1 23 463 485 463 485 0.97

5 11 0.0022 0.21 13.1 0.2 6 23 495 512 490 512 0.93

6 11 0.0079 0.75 11.3 9.6 1 23 518 540 518 540 0.97

7 11 7e-09 6.6e-07 30.4 0.6 1 23 546 568 546 568 0.99

8 11 3.8e-06 0.00035 21.8 1.2 1 23 574 596 574 596 0.98

9 11 0.00014 0.013 16.9 1.0 1 23 602 623 602 623 0.97

10 11 0.00066 0.062 14.7 0.2 1 23 629 651 629 651 0.97

11 11 3.7e-05 0.0035 18.7 2.1 3 23 659 679 657 679 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.035	3.3	9.3	1.6	1	23	376	398	376	398	0.93
2	11	8.9e-07	8.4e-05	23.8	2.5	2	23	405	426	404	426	0.97
3	11	3.2e-05	0.003	18.9	0.4	1	23	432	454	432	454	0.98
4	11	3.3e-05	0.0031	18.8	1.1	1	23	463	485	463	485	0.97
5	11	0.0022	0.21	13.1	0.2	6	23	495	512	490	512	0.93
6	11	0.0079	0.75	11.3	9.6	1	23	518	540	518	540	0.97
7	11	7e-09	6.6e-07	30.4	0.6	1	23	546	568	546	568	0.99
8	11	3.8e-06	0.00035	21.8	1.2	1	23	574	596	574	596	0.98
9	11	0.00014	0.013	16.9	1.0	1	23	602	623	602	623	0.97
10	11	0.00066	0.062	14.7	0.2	1	23	629	651	629	651	0.97
11	11	3.7e-05	0.0035	18.7	2.1	3	23	659	679	657	679	0.98

Sequence Information

Coding Sequence: ATGAACTCTTTCTTTCAGAAGCCGCCTCACAGGAAATGGACCTGGCTGAGCCCGAATGGTTCGGTTAGAAACGAGATAGATTTTATCTTGACGACGAAAAGGCGGATATTCAATAATGTCTCGGTGATCAACAGGGTGAAAACCGGAAGCGATCACCGAATGGTTCGAGGCATATTGAATATCAACGTCAAATTAGAAAGATCTCgcttgatgaagtctacgctccgccCTACTCGTGCTCATATCCAAAACCCTGAGACCTTTCAACTCGAGTTGGTAAACCGCTTCGATTGTCTAGATAAATGCGCTACAGTGGACGAGATTAATGGCGGGTTGGTAGAAGCTGTCCATACGGTGGGTTCTAAATTCTTTAGACCTCGTCGTAGAGATAGACCCCAGAAACTCTCGACTCACACACTCGACCTCATGGCCAAACGTCGATCTATGGCGTTGCAGTCTTCCGATGAAGCTAAGGCATGTCGGCTGCTCAATAGACAAATATGGAAATCTTTGCGACACGACGTCCGTGCCTACAATGCTGTAAGCATCAAGAAGACGATTGAGCGGAACAAAGGCTCCAAAGTGCTCGCAAAGGAATTGTCTATTGGGCAAAGCCAAATTACCAAGCTGAAGACGGAAGACGGTAACGTAGTGTCGACGAAGGCAGAGATATTGAGGGAGATCGAGAGGTTCTACGGGCAGCTTTACACTTCAGTTGAGCTTTTGAAGGCGGGCGGTACGCCGATAATAAAAGTCCTTCAGAGGCTCTTCAATTCCGTTCTGCTCGAGGGTGTAACGCCGGAAGCATGGAAAAGGAGTGTGGTGGTGCTGTTCTTCAAGAAAGAATCGCTGGAGGACCTTAGCACTATGCTCAGAGACCTCAACCGAGTTTCGCAACTGGTGGGCCTTAGGATGAACATGGACAAGACTAAAATCCTGTCAAATATCCATGTTGAGCCTATGCCAATTACTGTTGGGAGCTCAactctcgaagttgtagacgaataCGTCTATCAAGGACAAGTAATCCAGTTAGGCAGGTCGAACTTTGAGAGAGAGAATTATATCAAATTGAAAGCACTTAGAGCGCATATAAAGAATAGTCACCAAAAATGTCAGCAGCCATACCCGTGTAAACAGTGCAAAGATTCATTTAACTCGGAACATGATCTCAAGCTGCATTCGGCGTTACATACAAAAGGCTCCACGTGGAAATGCAACAAGTGCGAGAAAGAATTTCgttcgaAGTCTATGCTGCGGCGTCACATACAACGGCACATGGAGTCGAAGCGCTACTCCTGCGAGACTTGCGGCAAGTTGTTCATAGAACTGTACGCACTGCGGCGACACACGCGCGTGCACACTGGCGAAATAGTCGAGAAGAAACACAAGTGCAATCTCTGCGATAAAAgATACCGGTCCGCTGGCCAGCTAGTAGCGCACGTGTCTCGACACGGCGGCGCCAGGCCGTGCGTGTGTGCGTGCGGCAAGTCGTTCCCGACGGCGCGCCTGCTCGCCTCGCACGCGCGCGTCCACTCAGACGACAAGCCACACCCCTGCCGATACTGCGACAAGAGGTTCCGTCACGAGTCGACGCGCAACACTCACCACCGCACGCACACGGGCGAGAAGCCGTACGTGTGTAGTACGTGCGGGAAGGCATTCATACAGAACTCTAATCTCACGCTGCATATGCGCACGCATACTGGTGAGAAGCCGTACTCGTGCGCGATGTGTTCCCGCAAGTTCTCGTCGAGCTCGACTCTGAAGGCGCACGTGCGGAGCCACACCGGCGAGCGACCGTACGAGTGCAACGTGTGCGGGAAAAAGTTTGCGCGCATGACGTTGAAGTCCCACATGCGTCTGCACACGGGCGAGCGGCCGCACCAGTGCAGCGCCTGTCCCAAGAGCTTCGTGAACGCCGCACGGCTCCGGGAACACGCGCAGGTTCATACTGGTGAAAAGCCTTTTGGGTGTGCAATGTGTTCACAAACGTTTCCAACGAAGTCTCATCTTGTGAAACATTTGAAGACTCACCAACCACAGAAGAAGTCCAAGCGAATGGTGGTGTGCAATCCTGAGATATTGGTGTCGAACAAAATAGTTCTCTCTGAGAAGACATCTATCGAAGGACTGAAGGCAGAGACTGTGCGAGCAGAGGACACCGCCTGCAGAATTGTTATTTTAGATTCAGAACAAGCGCCATTAGATGTGCACTTGTCGTGCTAG
Protein Sequence: MNSFFQKPPHRKWTWLSPNGSVRNEIDFILTTKRRIFNNVSVINRVKTGSDHRMVRGILNINVKLERSRLMKSTLRPTRAHIQNPETFQLELVNRFDCLDKCATVDEINGGLVEAVHTVGSKFFRPRRRDRPQKLSTHTLDLMAKRRSMALQSSDEAKACRLLNRQIWKSLRHDVRAYNAVSIKKTIERNKGSKVLAKELSIGQSQITKLKTEDGNVVSTKAEILREIERFYGQLYTSVELLKAGGTPIIKVLQRLFNSVLLEGVTPEAWKRSVVVLFFKKESLEDLSTMLRDLNRVSQLVGLRMNMDKTKILSNIHVEPMPITVGSSTLEVVDEYVYQGQVIQLGRSNFERENYIKLKALRAHIKNSHQKCQQPYPCKQCKDSFNSEHDLKLHSALHTKGSTWKCNKCEKEFRSKSMLRRHIQRHMESKRYSCETCGKLFIELYALRRHTRVHTGEIVEKKHKCNLCDKRYRSAGQLVAHVSRHGGARPCVCACGKSFPTARLLASHARVHSDDKPHPCRYCDKRFRHESTRNTHHRTHTGEKPYVCSTCGKAFIQNSNLTLHMRTHTGEKPYSCAMCSRKFSSSSTLKAHVRSHTGERPYECNVCGKKFARMTLKSHMRLHTGERPHQCSACPKSFVNAARLREHAQVHTGEKPFGCAMCSQTFPTKSHLVKHLKTHQPQKKSKRMVVCNPEILVSNKIVLSEKTSIEGLKAETVRAEDTACRIVILDSEQAPLDVHLSC*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -