Basic Information

Insect: Laothoe populi
Gene Symbol: -
Assembly: GCA_905220505.1
Location: HG992146.1:5549976-5551706[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0015 0.14 13.6 3.2 1 23 9 31 9 31 0.96

2 15 0.096 9 7.9 0.0 2 20 59 77 58 78 0.91

3 15 0.0066 0.62 11.6 1.5 1 23 101 124 101 124 0.96

4 15 8.7e-05 0.0082 17.5 0.5 1 23 129 152 129 152 0.96

5 15 0.0046 0.43 12.1 2.1 1 23 157 180 157 180 0.96

6 15 3.1e-05 0.0029 18.9 0.2 2 23 183 205 183 205 0.97

7 15 0.042 4 9.1 2.2 1 20 211 230 211 232 0.94

8 15 0.16 15 7.2 1.5 1 23 286 309 286 309 0.94

9 15 0.00011 0.011 17.2 0.1 2 23 382 404 381 404 0.94

10 15 3.8e-06 0.00036 21.8 0.3 3 23 411 432 410 432 0.94

11 15 0.014 1.3 10.6 7.5 2 23 437 458 436 459 0.93

12 15 0.0032 0.31 12.6 4.4 1 23 464 487 464 487 0.97

13 15 6.8e-06 0.00064 21.0 5.0 1 23 491 514 491 514 0.98

14 15 0.0002 0.019 16.3 0.3 2 23 521 542 520 542 0.96

15 15 1.3e-05 0.0012 20.1 0.7 1 23 548 570 548 570 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0015	0.14	13.6	3.2	1	23	9	31	9	31	0.96
2	15	0.096	9	7.9	0.0	2	20	59	77	58	78	0.91
3	15	0.0066	0.62	11.6	1.5	1	23	101	124	101	124	0.96
4	15	8.7e-05	0.0082	17.5	0.5	1	23	129	152	129	152	0.96
5	15	0.0046	0.43	12.1	2.1	1	23	157	180	157	180	0.96
6	15	3.1e-05	0.0029	18.9	0.2	2	23	183	205	183	205	0.97
7	15	0.042	4	9.1	2.2	1	20	211	230	211	232	0.94
8	15	0.16	15	7.2	1.5	1	23	286	309	286	309	0.94
9	15	0.00011	0.011	17.2	0.1	2	23	382	404	381	404	0.94
10	15	3.8e-06	0.00036	21.8	0.3	3	23	411	432	410	432	0.94
11	15	0.014	1.3	10.6	7.5	2	23	437	458	436	459	0.93
12	15	0.0032	0.31	12.6	4.4	1	23	464	487	464	487	0.97
13	15	6.8e-06	0.00064	21.0	5.0	1	23	491	514	491	514	0.98
14	15	0.0002	0.019	16.3	0.3	2	23	521	542	520	542	0.96
15	15	1.3e-05	0.0012	20.1	0.7	1	23	548	570	548	570	0.98

Sequence Information

Coding Sequence: ATGCCATTCAAATGGCGCGGGAAGTATCTATGTTTCTATTGCGGCAAGAATTACACGGAATATAACGAGTTCAAAAAGCACACAAAGTCCCACGGTGACTGCAATACAAAGGATTACGCTCTGAGAATGATCAAAGGCAGTCATATTGAGATAAAAATTGACGTATCTGAAATTGTTTGTTATATTTGCAATGAATCTTTTGACAGATTCGATGACATTTTCGATCATCTGATTTGTAAACATAAATTGGAGTATGACAAAAATGTAGACATACCTTATCAGGAGTACAGATTAGCAGATTTTCGATGTTTACACTGCGAGGAACAGTTCTCTTACTTCGGTTATTTGGTGAACCATGTCAATAATGTGCATCCTCAAAACAGTTTCATATGCGACGAGTGCGGTGTCAGTTTTAATAAGAAACGAGATCTGGCGGTCCATTTCAGAAATTATCATCGTCAAGGGGGATATCCGTGCGATCAGTGTCTATTGAATTTTGAAACATTCCATACTTTACGTAGACATCAGAACAATGTTCATTACCGGCAGTGTAACAGTTGTGGCTTACGTTTTGCGTCTCTCTCGCTCCTACAGAAACACATAAATATTGACCATCCAGACAGTGGTAGTTACAAGTGCAATTATTGTTCCAAGGAACTACATTCATCTCAGGGTTTAAATCAGCATAAGAGTAAATGCAAAATAAAACTGATCACCCAGGTCGAATCCAGTAATTCAGTTACACCGATAGAAACTATCGAAGCGAGGAAGAATTTGAATCTCAAACAAATGAGACAGAATATTCAGTGTATCCTGAATATGTCTACAGCTGTTCCATTTAAGTTTTTCTCTAAATTCACCTGTTTttattgctcttcaaaatatGTGGAATTTGAGGAGTTGAGACATCATATTGCATTGGAGCACCCAGTGTGCGATCTCAAGTCCAAATATATGAGAAAATGTAAAGGCGAAAGAGTATCAGTTAAGATTGAAATATCAGTGCTTGCTTGCAAGCTGTGCTGTCTTCCAATGCTAGATTTGAATGTACTTACAGATCATTTGATATCTGAACATAGAGCTAAGTACGATAAGTCGATAACAGGCTGTTTGGAACCATTTAGGATCGTGAAAGATAATATCCCATGTCCGCTATGTGCGACTGTGTTTAGATACTTCAGCACACTCCAGCGCCATATGAATGCTGCTCAcagtaataataacaaaatttgcGACTATTGCGGTAAAAGTTTCCGTAACGTCACGAATCTTAATGTTCATATTTCATATACACATACAGGAACCTGTGAATGCCATATATGCGGGGCTAAGTACAAGAATCAATGGTGCCTCGCGCGCCACAAGGCGAAGCACCACGATGTCAAAGACTACAAGTGTACAAAATGTTCGGAAATGTTCCATTCTCAGTATCAGAGACAGAAGCATCTAATCAAAGCGCACGATGAAGGCCACAAATGTACGTATTGCGGGAGAATGTTTACCCGGAATTCGTTTATGAAGGATCATATACGAAGAACGCATTTGAAAGAGAAAAATGTTCCGTGTTCCGTGTGCAATGAAAGGttttttgataactaccttctgAAGTTACATATGGTTAAGCATCAAGGAGAGAGAAAGTTCACCTGCGAGGTGTGTGGCAAAGCGTTTCTAAGGAGGAGTAATCTTAATTCCCATAAGGAAATGCATAAGAAATACGGGCATGTGTGA
Protein Sequence: MPFKWRGKYLCFYCGKNYTEYNEFKKHTKSHGDCNTKDYALRMIKGSHIEIKIDVSEIVCYICNESFDRFDDIFDHLICKHKLEYDKNVDIPYQEYRLADFRCLHCEEQFSYFGYLVNHVNNVHPQNSFICDECGVSFNKKRDLAVHFRNYHRQGGYPCDQCLLNFETFHTLRRHQNNVHYRQCNSCGLRFASLSLLQKHINIDHPDSGSYKCNYCSKELHSSQGLNQHKSKCKIKLITQVESSNSVTPIETIEARKNLNLKQMRQNIQCILNMSTAVPFKFFSKFTCFYCSSKYVEFEELRHHIALEHPVCDLKSKYMRKCKGERVSVKIEISVLACKLCCLPMLDLNVLTDHLISEHRAKYDKSITGCLEPFRIVKDNIPCPLCATVFRYFSTLQRHMNAAHSNNNKICDYCGKSFRNVTNLNVHISYTHTGTCECHICGAKYKNQWCLARHKAKHHDVKDYKCTKCSEMFHSQYQRQKHLIKAHDEGHKCTYCGRMFTRNSFMKDHIRRTHLKEKNVPCSVCNERFFDNYLLKLHMVKHQGERKFTCEVCGKAFLRRSNLNSHKEMHKKYGHV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00819391;
90% Identity: -
80% Identity: -