Basic Information

Insect: Laothoe populi
Gene Symbol: -
Assembly: GCA_905220505.1
Location: HG992146.1:5579678-5583191[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.25 24 6.6 4.7 1 23 33 56 33 56 0.95

2 17 2.8 2.6e+02 3.3 0.3 2 23 82 104 81 104 0.82

3 17 0.029 2.7 9.6 5.1 2 23 127 149 126 149 0.94

4 17 0.0025 0.24 12.9 0.0 2 23 156 178 155 178 0.96

5 17 5.2e-05 0.0049 18.2 0.4 2 23 184 206 183 206 0.94

6 17 0.1 9.9 7.8 0.1 2 23 211 233 210 233 0.94

7 17 4e-05 0.0037 18.6 0.1 1 23 240 263 240 263 0.95

8 17 0.008 0.75 11.3 6.0 1 23 318 341 318 341 0.97

9 17 1.4 1.3e+02 4.3 0.2 2 23 367 389 366 389 0.82

10 17 0.029 2.7 9.6 5.1 2 23 412 434 411 434 0.94

11 17 0.00025 0.023 16.1 0.2 1 23 440 463 440 463 0.97

12 17 0.00046 0.043 15.2 0.7 2 23 469 491 468 491 0.95

13 17 0.042 3.9 9.1 0.2 2 23 496 518 495 518 0.93

14 17 2.2e-05 0.0021 19.4 0.3 1 23 525 548 525 548 0.94

15 17 0.0003 0.028 15.8 0.6 2 23 555 576 554 576 0.93

16 17 2.6e-05 0.0024 19.2 3.5 1 23 582 604 582 604 0.98

17 17 2.4e-06 0.00023 22.4 0.6 1 23 610 632 610 633 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.25	24	6.6	4.7	1	23	33	56	33	56	0.95
2	17	2.8	2.6e+02	3.3	0.3	2	23	82	104	81	104	0.82
3	17	0.029	2.7	9.6	5.1	2	23	127	149	126	149	0.94
4	17	0.0025	0.24	12.9	0.0	2	23	156	178	155	178	0.96
5	17	5.2e-05	0.0049	18.2	0.4	2	23	184	206	183	206	0.94
6	17	0.1	9.9	7.8	0.1	2	23	211	233	210	233	0.94
7	17	4e-05	0.0037	18.6	0.1	1	23	240	263	240	263	0.95
8	17	0.008	0.75	11.3	6.0	1	23	318	341	318	341	0.97
9	17	1.4	1.3e+02	4.3	0.2	2	23	367	389	366	389	0.82
10	17	0.029	2.7	9.6	5.1	2	23	412	434	411	434	0.94
11	17	0.00025	0.023	16.1	0.2	1	23	440	463	440	463	0.97
12	17	0.00046	0.043	15.2	0.7	2	23	469	491	468	491	0.95
13	17	0.042	3.9	9.1	0.2	2	23	496	518	495	518	0.93
14	17	2.2e-05	0.0021	19.4	0.3	1	23	525	548	525	548	0.94
15	17	0.0003	0.028	15.8	0.6	2	23	555	576	554	576	0.93
16	17	2.6e-05	0.0024	19.2	3.5	1	23	582	604	582	604	0.98
17	17	2.4e-06	0.00023	22.4	0.6	1	23	610	632	610	633	0.95

Sequence Information

Coding Sequence: ATGTCAGAAAACCGACGCAAATACGAGCTCACGAAGTTACTCGTCATCATTCTAGAAAACTCTACCATAATGCCATTTACGTGGTACTACAACAAATATACCTGCATATATTGCCGATGCCATTTCGTTGAAAGCGAAAAACTCAAGCAACATATGAAGGAGGAACACGAAGACTccaaaattactaaaatattccGCAGTCTTCTCAGCACTTACAGAGTCAAGTTGGACATTTCTGATATAAGATGTAAACTCTGTCCGAAGTCTATGCAAAGTTTCGAGGAATTTCTGGATCACGTTTCGGAGCAACACGATATGCAGTTTAATAAGGAGATCAGTCGGTGTATCTTTACATTTAAGCTGAGGGATGATGAAATGTCTTGTTGCGAGTGCGGTGAAAAGTTTCGTTTTTTCAGCTCGTTACTAAAACATGCGCACAAATACCATAACAGATCTGGTACCGTTGTGTGTGAATTTTGTGGACAAGGGTTTGTCAGCAAACCTAATGTCGATAGCCATATTAGAAATGTACATTCGGCCAAAGAGCTGAAATGTGACAAATGCAACAAAGTGTTTGCGAATCTCACTGCACTAAAGACCCACGTTGACCGAGAACATACCCAGCGAATGAAATGTCCCAAATGTCCCGCAGTTTTAAGCAGCATGTATTTAAAACAGCGCCATTTGGCGATTGTCCACGAAGATAAAACGTACCAGTTCCGATGTGATCAGTGCCCTGCTGTGTTTACCAGAAACAGTGCGTTGGCCCAGCACAAGGCAAGAGttcatttaaaagaaaaaacgTTGTCGTGCGAGATATACCAACAACTTGAGAAGCTCGCTACACTCGAGGAGATGTCTGAAAATCGACGCAAATATGAGCTCATAAAGCTACTCGTCATCATTCTAGAAAATTCTACCATAATGCCGTTTACCTGGTACTGCAATAAATATACGTGTTTCTATTGCCGTTGTCATTTCGTTGAAAGCGAGAAACTGAAGCAACATATGAGGGAAGAACACGAAGACTCCAAAGTTACTAAAATATTCCGCAGTCTTCTCGGCACTTACCGAGTCAAGTTGGACATTTCTGATATAAGCTGCAAGATCTGTCCAAAGTCTATGCAAAGCTTCGAGGAATTTCTGGATCATGTTTCGGAGCAACACGATATGCAGTTTAATAAGGAGATCAGTCGGTGTATCTTTACATTTAAGCTGAGGGATGATGAAATGTCTTGTTGCGAGTGCGGTGAGAAGTTTCGTTTTTTTAGCTCGTTACTAAAACACGCTCACAAATACCACAATAGATCTGGTACTTTCGTGTGTGAGTTCTGTGGACAAGGGTTTGTCAGTAAAACTAATGTCGATAGCCATATTAGAAACGTACATTCACCCAAGGAGTTAAAATGTAACAAATGCAGCAAAAATTACCCAAACCTTACGGCATTAAAGACCCACATCGACCGAGAGCATACCCAGCGGATGAAGTGCCCCAAATGCCCAGCAGTTTTAAACAGCAAATATTTAAAACAGCGTCATTTGGCACTAGTCCACGAAGATAAAACGTATCAGTTCAGTTGTGAACAATGCCCTCGAGTGTTTACAAGAAACAGCGCGTTGGTCCAGCACAATTTGAGAGTACATTTGAAAGAAAAAACAATGACGTGCGAGATATGTGGGTTCAAAGTATTTAATAAAGAGCTATTGAGAAGGCACATGGTGAGACATGACGATACCAGGCCTTACGAATGCGAATTTTGTAAGAAAACATTCCAAAGAAAGAAGACGTTACAACTACATACCAGAATACACACGAATGATAAAAGGTATGCGTGCAAAGATTGTGGTAAGGCCTTTGTCCAAGTAACCAGTCTAAAACTGCATGTCAGAGTACATCATCCCAGTGCAAATGAGACCTGGACGTAG
Protein Sequence: MSENRRKYELTKLLVIILENSTIMPFTWYYNKYTCIYCRCHFVESEKLKQHMKEEHEDSKITKIFRSLLSTYRVKLDISDIRCKLCPKSMQSFEEFLDHVSEQHDMQFNKEISRCIFTFKLRDDEMSCCECGEKFRFFSSLLKHAHKYHNRSGTVVCEFCGQGFVSKPNVDSHIRNVHSAKELKCDKCNKVFANLTALKTHVDREHTQRMKCPKCPAVLSSMYLKQRHLAIVHEDKTYQFRCDQCPAVFTRNSALAQHKARVHLKEKTLSCEIYQQLEKLATLEEMSENRRKYELIKLLVIILENSTIMPFTWYCNKYTCFYCRCHFVESEKLKQHMREEHEDSKVTKIFRSLLGTYRVKLDISDISCKICPKSMQSFEEFLDHVSEQHDMQFNKEISRCIFTFKLRDDEMSCCECGEKFRFFSSLLKHAHKYHNRSGTFVCEFCGQGFVSKTNVDSHIRNVHSPKELKCNKCSKNYPNLTALKTHIDREHTQRMKCPKCPAVLNSKYLKQRHLALVHEDKTYQFSCEQCPRVFTRNSALVQHNLRVHLKEKTMTCEICGFKVFNKELLRRHMVRHDDTRPYECEFCKKTFQRKKTLQLHTRIHTNDKRYACKDCGKAFVQVTSLKLHVRVHHPSANETWT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -