Lpop000731.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- -
- Assembly
- GCA_905220505.1
- Location
- HG992146.1:5538158-5547633[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.017 1.6 10.3 1.3 1 23 242 265 242 265 0.94 2 26 1.8 1.7e+02 3.9 0.1 3 23 292 313 290 313 0.95 3 26 0.029 2.8 9.5 1.1 1 23 335 357 335 357 0.98 4 26 0.63 59 5.4 2.6 1 17 361 377 361 383 0.74 5 26 0.042 3.9 9.1 1.1 1 23 387 410 387 410 0.94 6 26 0.079 7.5 8.2 4.7 2 23 417 439 416 439 0.97 7 26 0.0014 0.13 13.7 0.3 1 23 446 469 446 469 0.95 8 26 0.0087 0.83 11.2 4.6 1 23 475 497 475 497 0.97 9 26 3.1e-06 0.00029 22.1 3.7 1 23 503 525 503 525 0.98 10 26 2.2 2.1e+02 3.6 0.7 1 13 531 543 531 545 0.89 11 26 0.099 9.3 7.9 1.8 1 23 581 603 581 603 0.96 12 26 0.067 6.3 8.4 0.0 2 23 632 654 631 654 0.94 13 26 0.0099 0.93 11.0 0.3 2 23 675 697 674 697 0.95 14 26 0.00054 0.051 15.0 2.6 2 23 703 725 702 725 0.95 15 26 0.0019 0.18 13.3 1.2 1 23 730 753 730 753 0.96 16 26 1.3 1.3e+02 4.3 0.1 2 23 756 778 755 778 0.93 17 26 0.0026 0.24 12.9 1.0 2 22 785 805 784 805 0.93 18 26 0.004 0.38 12.3 0.2 1 23 866 889 866 889 0.95 19 26 0.076 7.2 8.3 0.3 3 23 918 939 916 939 0.94 20 26 0.033 3.2 9.4 0.3 2 23 962 985 961 985 0.95 21 26 0.0008 0.076 14.5 0.4 3 20 992 1009 990 1013 0.90 22 26 0.0061 0.58 11.7 0.8 1 23 1018 1041 1018 1041 0.97 23 26 0.0013 0.12 13.8 0.3 2 23 1047 1069 1047 1069 0.94 24 26 6.3e-05 0.0059 18.0 4.9 1 23 1073 1096 1073 1096 0.97 25 26 0.00028 0.027 15.9 0.6 2 23 1103 1124 1102 1124 0.96 26 26 0.018 1.7 10.2 3.4 1 23 1130 1152 1130 1152 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTTGATGAGATTGTAGTGAAGGAGAGCCCCGGTTTGTGCCGGTGTTGTCTCTCCGAAGGATGTTACAAGGACCTAGGCTCGGAGTACACTTGGATGAACGAGAATGAAGTTTATGCTGATTTGTTGTTGGAATGTTTTGATATTAGtATAACTCAACATAATGACGGTCCCAATGGCCCCAACCGGTTGATATGTGAGGTGTGCATCACCAGACTACGGGATGCCTGCAACTTCAAGAAACAGGTCCTTGAGTCTGAGAAAAAATTCATTGACATGGTGGCACGTGGGGATTTTAGGCCAAAGGTGCTGATATACCAAGCACAGATGAAATCTGAAGAAAATGCCGAAGAAGTAAATGTTGAGTATCTCGAGGATGAAATGGATTTTGGAGAtgATGAACCGCTTAAACGGGAAGATCTGACAGGGTCCACAGCGTCTAATATAACAGTAGAACCGCTTCCTGTTAAGGGCAAGCGTGGCCGGCCGCGCAAGAACGATGTGAAGACAGAAAAGCGTGTCAAAGTGGCTAAGACGGAGGAGAAGGCGAAAACGTCGAAAGCAGTCGCCAAAGGTGGAAAACGCACGAGCCGGCCGTGCGACGAGGCTCTGAGTAAGTCCTCGATGTCCGCGACCAAACGCAACAGACTGATGAAGAGAAACGCTATCACTGTTTTAGAAACGGCCACAATAGTCCCGTTCAAATGGCATAGACAAAACTACCTTTGTTTCTTTTGCCACCTCGCTTTCAAAAGTATCGATGATCTAAAAGATCATACACTCATGGAGCATACCAGTTCCAACGTCAAAACAGCTGTTTTGTATCTAAGAAGAGATGAGAAAGTTAAAGTCGAAGTGTCCGAGATAAACTGTAAACTATGCAACGCCAAATCCGATAGCCTAAATGACTTTATTGATCACGTCAAAGTGATACATGAGAAAAGTTTTACAGAAGAATGTGGTTACGGACTATTGCCGTATAAGTTGAGCGTTAATATGTTTCAATGTGCAGTTTGCAGTCAAcagtttcaatattttatcaagCTTAATCAACACATGAACGAACACTACGGGAGCTATGTGTGCGAGCTATGTGGGAAATCGTTTTTAAGTCACGACAGATTGAGATGTCATTCCTTAAGTCACGGTGCCGGATTTAAATGTAACTCTTGCCCGGAAACATTCGATTCGTTAACACAAAAAAACAATCACGAATCCAAAGTTCATAACAGAGATAAACGTATAAAATGTTTCTTCTGTCTAGAGACGTTTTCTAATTACGCAAATAGGAAGCGGCATCACAAAACCAATCATGATGTGAGCATACCAGAGTTTAATTGCCCGGTATGCGGAAAGTCGTTCCAGATTATGAGCAAAATGAAGGTACATCTTAAAGAAGTGCACATTAGAGAGAAGAACTTTTCATGCTCTATGTGCGAGCAGAAGTTCTTCTCTAGGACACACGTACAAAAGCACATGGTGAAGCACTATGGAGAGAGAACGCATCAATGTGATGTGTGCAAGAAATCGTATTCGAGGAAACAAACACTGAGGGATCATATGAGGGTACACAGCGAGAACAAGAGGTTTAACTGTAACGTTTGCACTCATACGTTTGTGCAAAATGTTAAACCGAGGAAATACAGAGGCTGCGAATCGTCCTCGATGCGCAGAAGAAAAAACCTTCAAATACTTTTCAACAGCACCTCTATCATACCGTTTAAATGGCGCGGCAAGTATTTATGCTTCTACTGCAGCAAAGATATTTCAGAGTACACCGAGCTCAGAAAACATACTAAGTCACACGGCAGCTGCTCTACTCGCGACCATTCCCTGAAGGTGCTCAAGGGAGGGCAGAACATGGAAATTAAGATTGATGTGTCTGATGTCACTTGCGAGATTTGCAGCGAACCTTTTCCTACATTTGACGAGGTTTTGAATCATTTGTACATAAAGCACAAACTTGAATATGACAGAGGAGTTGAAATGGCTATCGAAGAGTACAGGCTGATTGATCTTAGCTGTTTATTGTGTGGTGAAAAGTTTACATACTTTGGTTACTTGGTATCTCACGTGAATAGTACTCACCCGAAGAACTGCCTTATATGTGATAAATGTAatcaaaagtttaataaaaagcgAGATCTTTTCTCTCATATGAAGAATTATCATAGGGAAGGTGGATACCAGTGTGAGATGTGCCCTCAGACTTTcagttcattaaatatattgagGAAACATAGAAATAACAGACACTTGACTCGGTGTAATATTTGCCAGTTAAAGCTCCCTTCGGCGGTATTGAAACAAAAACACATAGAGCTGGAACATCCAGACGATGGTTCATTACAATGCGACAACTGTGACAAAGAGTTTCACACGAAGCAAGGATTAAAAATGCACGCGAGGAAATGCAAAGGCGAGGACGAGTTTTTAGAGTTTGCTCTCAAAAAGGAAGAGTACATAGCAATGGATTTAGATCAGAACTACGAGGACCGTTCGAAAAGGCCGAGTGTCAAGCAAATTCGTGAAAACATTGTCATTGTGATTAATATGTCGACAGCAATACCTTTCAACTTTTACAAGAACAAATTCAATTGTTTTTACTGCTCGAAGGATTTTCCCGATTCTGATGCCATGAGAGAACATACAATAATTGAGCATCCAGTTTGTGATGTTAAAGAGAAATGCATCCGGAAGTGTAGAGAGTCAGTAGCTTGCGTAAAAATAGACGTGTCCTCATTAGCTTGCAAGATCTGCTTTGAGTCGCTGACAGATTTGGATTGTTTGATCGATCATCTTATTATCAAACATGAAGCTAATTACGATAAATCAATTACGACTTGCTTGCAACCCTACCGTCTCATAAAAGACCACATGACCTGTCCCAACTGTCCAGGAGAAGTGTTTCGATTCTTCGGAACTTTGCTTAAGCATATGAACAAAAAtcacactaataataatattatatgtgtgtattgtgGAGAGACTTTTAGACGTGATCAAAACTTGAGGGTACACATATGGAGGCATCATAGGGACGGCCGATTCAAATGTAACATCTGCGGAACCGAATGCAACATCCCTTCTAGATTGTACATGCATATGGCAAAAGTTCACGGCGTGAGGGCGGCCAAATGTCCAAAGTGCCCAGAACGTTTCGCCACTCAGTATTTAAGACAGAAGCATTTAATAGAAGTCCACGATTCTGGACACAAGTGCACCTATTGCGGTAAACTATTTACTAGAAACTCATTTATGAGGGACCATATCAGACGGACTCATCTGAAAGAGAAGAACGTTGAATGCTCAATATGTAACATGAAGTTCTTTAATAACATTCTTCTGCGGAGACACATGGTGAAGCACAGTGGCGAGAAGAACTTCCATTGTGACGTTTGTGGAGAGAGGTTCTTTTGGCGGAAGAGCCTTAGGACGCACATGACTAAACATAATAAACATGTTAATCCTGTGCAAATATAA
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGSEYTWMNENEVYADLLLECFDISITQHNDGPNGPNRLICEVCITRLRDACNFKKQVLESEKKFIDMVARGDFRPKVLIYQAQMKSEENAEEVNVEYLEDEMDFGDDEPLKREDLTGSTASNITVEPLPVKGKRGRPRKNDVKTEKRVKVAKTEEKAKTSKAVAKGGKRTSRPCDEALSKSSMSATKRNRLMKRNAITVLETATIVPFKWHRQNYLCFFCHLAFKSIDDLKDHTLMEHTSSNVKTAVLYLRRDEKVKVEVSEINCKLCNAKSDSLNDFIDHVKVIHEKSFTEECGYGLLPYKLSVNMFQCAVCSQQFQYFIKLNQHMNEHYGSYVCELCGKSFLSHDRLRCHSLSHGAGFKCNSCPETFDSLTQKNNHESKVHNRDKRIKCFFCLETFSNYANRKRHHKTNHDVSIPEFNCPVCGKSFQIMSKMKVHLKEVHIREKNFSCSMCEQKFFSRTHVQKHMVKHYGERTHQCDVCKKSYSRKQTLRDHMRVHSENKRFNCNVCTHTFVQNVKPRKYRGCESSSMRRRKNLQILFNSTSIIPFKWRGKYLCFYCSKDISEYTELRKHTKSHGSCSTRDHSLKVLKGGQNMEIKIDVSDVTCEICSEPFPTFDEVLNHLYIKHKLEYDRGVEMAIEEYRLIDLSCLLCGEKFTYFGYLVSHVNSTHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYQCEMCPQTFSSLNILRKHRNNRHLTRCNICQLKLPSAVLKQKHIELEHPDDGSLQCDNCDKEFHTKQGLKMHARKCKGEDEFLEFALKKEEYIAMDLDQNYEDRSKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDAMREHTIIEHPVCDVKEKCIRKCRESVACVKIDVSSLACKICFESLTDLDCLIDHLIIKHEANYDKSITTCLQPYRLIKDHMTCPNCPGEVFRFFGTLLKHMNKNHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICGTECNIPSRLYMHMAKVHGVRAAKCPKCPERFATQYLRQKHLIEVHDSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMTKHNKHVNPVQI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -