Lpop003238.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- ZFY_1
- Assembly
- GCA_905220505.1
- Location
- HG992147.1:25076661-25081575[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.3e-07 3.1e-05 25.1 0.5 1 23 185 207 185 207 0.98 2 13 2.1e-05 0.002 19.4 1.1 1 23 242 264 242 264 0.98 3 13 2.2e-05 0.0021 19.4 1.7 1 23 269 291 269 291 0.98 4 13 1.2e-05 0.0012 20.2 2.8 1 23 297 319 297 319 0.98 5 13 6.7e-07 6.3e-05 24.1 1.0 1 23 325 348 325 348 0.96 6 13 3.1e-05 0.003 18.9 2.5 1 23 354 376 354 376 0.97 7 13 1.8e-05 0.0017 19.7 0.8 1 23 382 404 382 404 0.98 8 13 3.4e-05 0.0033 18.8 2.3 1 23 410 432 410 432 0.99 9 13 2.7e-08 2.5e-06 28.6 0.7 1 23 438 460 438 460 0.99 10 13 1.1e-06 0.0001 23.5 0.8 1 23 466 488 466 488 0.98 11 13 0.13 12 7.5 2.9 1 23 494 513 494 513 0.94 12 13 4.6e-07 4.4e-05 24.7 0.4 1 23 519 541 519 541 0.98 13 13 0.0005 0.047 15.1 4.3 1 23 547 569 547 569 0.98
Sequence Information
- Coding Sequence
- atggCTGAAGTGTGGAGCCCTGGCGGCTTGTGTCGATGTTGTCACACGGCGGGCAATTTTAAAAGCCTCGGAGTTCCTTATGTTTTCGAGGGGATTGAAGAGGTATTCTCTGTGATGATGAGAGAAACATTTGATATTATGATAGAACCATCAGGAGATGTGGTTGCATATGGTATTTGTGAGGCATGCGAGCCCAGGTTGAGAGATGCAGCTCATTTTAAAAGGCAAGTTGTGGCATGTGAAGAAAAATTCCAACAGTATGCATTCAAAGatGTCAGTTTATTCAATAAAGATGTTAAAGTGGAGTTGGAATGTCCTACAGgtgtAAAAGAAGAATTGCAAAGTAATATTGGGCGGGAATTCAAATAtgaagATGACAATGTGTCCACAATGGAGGTGTATATAGGACCCGATTTAGAAGATCAGCCATTATCCTTGCTCAGGAGTAGTCAGAAGAATGATGATGACATGGGTGCAGATCTGTGGGCACCATCACAAGATGTCAGCGATGaCGATGATACAAAACCCCTAAcacagacaaaaataaaaaaatactcgtgCGAAGTGTGCCAAAAGAGATTCTCTTACAACGGTTCGTTAGAAATACACATGAGAATACACAGCGGCGAGAAAAATTACGAATGTCGCGTCTGTAACTCATTACATTTGAGTAATAAAGAACTGACTCGGCATATAGAAGAAAACCACTCTCGAAACGGCACCTACCCCTGTACGATATGCAACAAAGACTTCGAGAAAGCGAGATTCTTAAAAAAACACCTATTGACGCATTTCGAACAGAAGTTCTCCTGCGAAGTATGTTCGAAAGAGTTTCAGAGGAAGAAAGGGCTGAAGGAACATCTGAAAACGCATTCGGGAGAGAAAAAGTTCACGTGCAATATATGTAACAAGGCGTTCGGACATAACCAGACGTTGAAGTCTCATATCTACACACATACTGGTGAAAGACCGTATGTGTGTGATGTCTGCGGACGAAGATTTCCCCAACGGACACATTTGAAGCGtcacatatatataatacataaccAAATTAAACCACACTCCTGTAATGTGTGCCAAAAGCAATTTTCAAGCAAGAGTTACTTGGCTATACATGAGCGACAGCACACCGGAGAGCGGCCTTATTCCTGCGACGTCTGCAAAAAAGACTTTACCGCGTACACAACCCTAAAAGTCCACATGAGAGTCCACACTGGCATCAAACCGTACAGATGCAACTTCTGCGACCGCCAATTCGCCCAAATGGCTAGCTTCAAACTCCACCAAAGAACGCACACAGGCGAAAGGCCTTACCAGTGTAAAATATGCAAAAAGCCCTTCTCGGATAACGGGTATTTGAAGATACACATGAGAGTCCATTCTGGGGAGAGACCGTACAGTTGTGAAGTATGCAAGCGGGCTTTTAGAGAGACCGGGCAACTCAAACGGCATATGAGAGTCCATACTGGCATAAAGCCTTATACATGCAAGGTTTGCAATAAGCAAATAGGCAACTTGTCTAAGCACATGCGCGTGCATTCTGACGAGAGGCCGTATAATTGCAATATATGTAATAAGCAGTTTGCTGTGAATGGTAATTTGAAGTTGCATATGAGAGTCCATTCTGGAGAGAGGCCGTTTAGCTGTGAGTTGTGTAGTAGCCAGTTTACGCAAAGTAGTGGCTTGAAACGGCATAGATGTACCCATAAGAATGAAGGGCAATGA
- Protein Sequence
- MAEVWSPGGLCRCCHTAGNFKSLGVPYVFEGIEEVFSVMMRETFDIMIEPSGDVVAYGICEACEPRLRDAAHFKRQVVACEEKFQQYAFKDVSLFNKDVKVELECPTGVKEELQSNIGREFKYEDDNVSTMEVYIGPDLEDQPLSLLRSSQKNDDDMGADLWAPSQDVSDDDDTKPLTQTKIKKYSCEVCQKRFSYNGSLEIHMRIHSGEKNYECRVCNSLHLSNKELTRHIEENHSRNGTYPCTICNKDFEKARFLKKHLLTHFEQKFSCEVCSKEFQRKKGLKEHLKTHSGEKKFTCNICNKAFGHNQTLKSHIYTHTGERPYVCDVCGRRFPQRTHLKRHIYIIHNQIKPHSCNVCQKQFSSKSYLAIHERQHTGERPYSCDVCKKDFTAYTTLKVHMRVHTGIKPYRCNFCDRQFAQMASFKLHQRTHTGERPYQCKICKKPFSDNGYLKIHMRVHSGERPYSCEVCKRAFRETGQLKRHMRVHTGIKPYTCKVCNKQIGNLSKHMRVHSDERPYNCNICNKQFAVNGNLKLHMRVHSGERPFSCELCSSQFTQSSGLKRHRCTHKNEGQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00428345;
- 90% Identity
- -
- 80% Identity
- -