Lpop019919.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- -
- Assembly
- GCA_905220505.1
- Location
- HG992162.1:7550280-7551077[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-10 1.9e-07 31.6 0.0 3 38 17 52 15 57 0.90
Sequence Information
- Coding Sequence
- ATGCCGCGAAATTACAAGAGAATAACTAACAAATCAtcttataataaagaaaaactttTAGACGCCGTGCGAGCTGTTCGTAATGGCGAATTAAGTGGGTATAAGGCTTCTCGTGTTTATAATATACCAAGAATGACGATCATGGatcatgttaataataaaagatgGAAATCAACCACTCTCGGGAGGCCAACGGCGCTTTCGTTTGATGTTGAAAAAAAACTGGCGTCATTACTTCACATTATGGAACGGTATGGATTTGGGCTCACCAGGGATGAGACTTTAGAAATAGTTAGTCATTATGTaatccaaaataaaatacaaactcCATTCAAAAATGGAAAGCCTGGCCAAGACTGGTTTATGGCTTTTAAAGAACGCCACAATTTGTCAGTTAAAAAGCCACAAGCTGTCGAATACGCACGAAGAAAAGCCATCGATCCCTATATTATATACCCATATTTCGACCTACTAGAAAAAACAATAGAAGACTTAGGTCTAACTTATAAACCAGAAGCAATATGGAATCTAGATGAGACAAGTTTCTCCAAAGACccatctaaaatgaaaatagtcGGCCGCAAAGGCTACGCATCTATTAGAATGGTAGCTAGCCCAGGAAAGGATAATACCACGGTCCTGCTAGCTGCTAATGCAGTCGGGGATAAAATTCCTCCGCTCATAATATTTAAGGGCAAGAATGTTTGGGATCAGTGGACTTCACCTAATGCATATCCACAAACTACATATGCTGCCACAGAAAATGGATGGATGGAAACCGAGGTCTTtgaaaactaa
- Protein Sequence
- MPRNYKRITNKSSYNKEKLLDAVRAVRNGELSGYKASRVYNIPRMTIMDHVNNKRWKSTTLGRPTALSFDVEKKLASLLHIMERYGFGLTRDETLEIVSHYVIQNKIQTPFKNGKPGQDWFMAFKERHNLSVKKPQAVEYARRKAIDPYIIYPYFDLLEKTIEDLGLTYKPEAIWNLDETSFSKDPSKMKIVGRKGYASIRMVASPGKDNTTVLLAANAVGDKIPPLIIFKGKNVWDQWTSPNAYPQTTYAATENGWMETEVFEN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00858483; iTF_00114039;
- 90% Identity
- iTF_00858483;
- 80% Identity
- -