Lpop020304.2
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- -
- Assembly
- GCA_905220505.1
- Location
- HG992162.1:9913100-9915547[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-12 1.4e-09 38.5 0.1 1 44 16 59 16 60 0.94 2 2 3.1 4e+03 -1.4 0.0 20 31 170 181 169 183 0.79
Sequence Information
- Coding Sequence
- ATGCCGCGAAAGTATTACAGAAAATCGCTTCGTGCGACGAATTATACGCAGGAAGATTTAGAAGCTGCCATAGAAAGTGTAGCTAACGGGGAAAGAAGCCAATATGCTGCAGCAAAACACTACAATGTACCAGTATCGACACTTAATGATAGGATTAAAGGTAAAACTAGAACAAAAAGCCAAAGCTTAGGTAGACCAACTGCCCTTCCTAACGAAATAGAAATTAGATTAGCTAATGCTCTTACTGTTCTAGAAAAATGGGGTTTGGTCTCTCCAGAATTGAAAATTCGACAAACCAAACCAAAAAGAAATACGAACAAAAAGAAACGTATAGGACTTGGTGCTGAAGTTATTACACAGAAATGTATAGACAAACATAATACAGACCAAATGATGCAAGATAGAAATACTGTAGTAAAGAAGACTGTAAATGAATACAAAAAGAAACAGaatgaaaatgttaataaagATGATATAGTTTCAGTACTGCCTGAGCCAAAGATTTTACGACGTGGGCAGATTATATTTGATATTAATTTCAGCAATTttaacatacaataa
- Protein Sequence
- MPRKYYRKSLRATNYTQEDLEAAIESVANGERSQYAAAKHYNVPVSTLNDRIKGKTRTKSQSLGRPTALPNEIEIRLANALTVLEKWGLVSPELKIRQTKPKRNTNKKKRIGLGAEVITQKCIDKHNTDQMMQDRNTVVKKTVNEYKKKQNENVNKDDIVSVLPEPKILRRGQIIFDINFSNFNIQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -