Lstr045102.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- stc
- Assembly
- GCA_014465815.1
- Location
- CM025323.1:33513192-33522350[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.3 7.1e+03 -1.5 0.7 5 10 18 23 18 23 0.95 2 11 3.1e-08 0.00072 20.9 13.5 4 18 36 50 29 51 0.86 3 11 1.3 3.1e+04 -3.6 1.7 6 10 81 85 81 85 0.95 4 11 0.00015 3.5 9.1 7.8 1 11 91 101 91 103 0.96 5 11 0.58 1.3e+04 -2.4 0.8 5 10 107 112 105 113 0.59 6 11 1.9e-11 4.4e-07 31.1 10.2 1 19 118 136 118 136 0.98 7 11 0.19 4.4e+03 -0.9 1.1 5 10 164 169 158 171 0.89 8 11 2 4.6e+04 -8.3 12.2 10 18 183 192 172 193 0.79 9 11 1.1 2.6e+04 -3.3 0.4 9 11 211 213 210 214 0.77 10 11 7e-07 0.016 16.5 11.4 1 16 229 244 229 255 0.88 11 11 2.5e-06 0.057 14.8 13.0 1 16 261 275 261 280 0.91
Sequence Information
- Coding Sequence
- ATGAAATTGGACGATAATGTTAAACGTACGTCGTGCTTGGATCCTGTGCCTACGTGCTCCGCTGTATGTGAGAAACAACTGAAATGCGGTCAACCAAGCTCTCCTCATACTTGTAAGTCGTTGTGCCATGAAGGAGCCTGTCCTCCTTGTGAGCTGTCGACGCTTGTACGGTGCAGGTGTGGCAACATGGACAAGGAAACGCCATGCCAAAGCCTGACAACTAAAGCCGACGAGGCTCTGTGTCAAAGGAAATGCACCAAGAAACGAAGATGTGGCAAGCACAAATGCAACCAATTGTGCTGTATCGAAGTTGACCACATCTGCCCGCTGCCTTGCAATCACGTTCTCACCTGTGGCCAGCATAGGTGCGAAGCACTGTGTCATAAGGGCTACTGCCAGCCGTGCTGGCGTGCAAGTTTTGAAGAGCTGTTCTGTGAATGTGGCAAAACGGTGAGGTATCCTCCCGTGCCGTGTGGTGCCAAGAGGCCCACGTGTGATGAGCCGTGCAGTCGTCAGCATTCCTGTGATCATGCCGTGCTGCATAACTGTCACAATGATCCTGAATGTCCTCCCTGCATTGTACTCACATCCAAGTACTGCTACGGCAAGCATGAATTGAGAAAGGCTGTACCGTGCCACGTAGAGGAATTCTCTTGTGGGTTGCCTTGTGGCAAAGATCTTCCATGCGGTCGTCATAAGTGTATCACAAGCTGTCACAAAGGCGAATGTTTGAAACCGGATCAAGCGTGTGTCCAGCCGTGTACCAACCCTAGGTCTATTTGCGGACATCCCTGCAATTCGCCATGTCATGACGGAGATTGTCCTGATACTCTGTGTAAAGTCAAGATTACAGTAACTTGCGCATGTGGCCATAGAAGCACTTCACGAACTTGCTGTGAAAACAATAAAGAGTACCAACGTATAGCCACTTCCATTCTGGCCTCAAAGATGGCCGAAGTACAGCTAGGCAAGTCGATTGATCTGCAAGATATGCAGAAAGTTCACAAGCTGAGTTTAAAGACGTTGGAGTGCATTGAGGAATGCCGAGTTATTGATCGCCAACGAAAATTGAGCATCGGATTGCAAATTCGCAATCCCGACCTGACTGCCAAGTTGACTCCACGTTATTCTGATTTCATGCGATCTTGGGGAAAGAAGGATCCAAGATTTTGCAAGCATGTACACGATAGATTGACCGAGCTTGTACAATTAGCAAAACAGTCGAAACAGAAGAGTCGTAGCTATTCATTTGAAACTATGAATAGAGACAAAAGACAATTCGTACATGAGTACTGTGAACATTTCGGATGTGAATCTGTCGCTTACGATGCTGAGCCCAAAAGGAACATTGTAGCCACTGCTCAACGAGACAAGGCTTGGCTCCCAAGTTATAGTTTACTCGAAGTCTTGCAAAGAGAAAGTGGCCAACGAAAAGTTCCAGTACCCACAATGAACATGAAAAAAGGATTAGTTCAACTGTCCGGGCCGTCTTCAGCTTCTGCTTGGAGCACTGGAATGGTTCCTGTAAAATTGTCTGGGACAAATAATTCGTCCTCATCAGACTCTTCCAAGCAACAGACTCCAGCATCCAGCTCTTCCACTTATGATTATTTCGATTGA
- Protein Sequence
- MKLDDNVKRTSCLDPVPTCSAVCEKQLKCGQPSSPHTCKSLCHEGACPPCELSTLVRCRCGNMDKETPCQSLTTKADEALCQRKCTKKRRCGKHKCNQLCCIEVDHICPLPCNHVLTCGQHRCEALCHKGYCQPCWRASFEELFCECGKTVRYPPVPCGAKRPTCDEPCSRQHSCDHAVLHNCHNDPECPPCIVLTSKYCYGKHELRKAVPCHVEEFSCGLPCGKDLPCGRHKCITSCHKGECLKPDQACVQPCTNPRSICGHPCNSPCHDGDCPDTLCKVKITVTCACGHRSTSRTCCENNKEYQRIATSILASKMAEVQLGKSIDLQDMQKVHKLSLKTLECIEECRVIDRQRKLSIGLQIRNPDLTAKLTPRYSDFMRSWGKKDPRFCKHVHDRLTELVQLAKQSKQKSRSYSFETMNRDKRQFVHEYCEHFGCESVAYDAEPKRNIVATAQRDKAWLPSYSLLEVLQRESGQRKVPVPTMNMKKGLVQLSGPSSASAWSTGMVPVKLSGTNNSSSSDSSKQQTPASSSSTYDYFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -