Basic Information

Insect: Laodelphax striatellus
Gene Symbol: Sall1
Assembly: GCA_014465815.1
Location: CM025324.1:27589435-27598133[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.41 49 6.0 0.5 3 23 907 928 906 928 0.94

2 15 0.27 33 6.5 1.8 2 23 943 963 942 963 0.96

3 15 0.0026 0.31 12.9 3.3 2 23 969 990 968 990 0.98

4 15 0.69 82 5.3 4.5 1 23 995 1018 995 1018 0.94

5 15 0.0054 0.64 11.9 1.3 3 23 1026 1047 1025 1048 0.96

6 15 0.00026 0.031 16.0 1.1 3 23 1055 1075 1053 1075 0.97

7 15 0.0029 0.34 12.8 0.4 3 23 1085 1105 1084 1105 0.98

8 15 0.0023 0.27 13.1 0.2 1 23 1111 1133 1111 1133 0.97

9 15 0.06 7.1 8.6 6.4 1 23 1137 1159 1137 1159 0.98

10 15 0.07 8.3 8.4 3.0 6 23 1169 1186 1167 1186 0.96

11 15 0.34 41 6.2 0.2 1 23 1204 1226 1204 1226 0.94

12 15 0.00017 0.02 16.6 1.5 1 23 1233 1255 1233 1255 0.97

13 15 0.0003 0.036 15.8 4.0 1 23 1261 1284 1261 1284 0.93

14 15 0.00016 0.019 16.7 0.9 1 23 1290 1312 1290 1312 0.97

15 15 3.7e-05 0.0044 18.7 0.7 1 23 1318 1340 1318 1340 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.41	49	6.0	0.5	3	23	907	928	906	928	0.94
2	15	0.27	33	6.5	1.8	2	23	943	963	942	963	0.96
3	15	0.0026	0.31	12.9	3.3	2	23	969	990	968	990	0.98
4	15	0.69	82	5.3	4.5	1	23	995	1018	995	1018	0.94
5	15	0.0054	0.64	11.9	1.3	3	23	1026	1047	1025	1048	0.96
6	15	0.00026	0.031	16.0	1.1	3	23	1055	1075	1053	1075	0.97
7	15	0.0029	0.34	12.8	0.4	3	23	1085	1105	1084	1105	0.98
8	15	0.0023	0.27	13.1	0.2	1	23	1111	1133	1111	1133	0.97
9	15	0.06	7.1	8.6	6.4	1	23	1137	1159	1137	1159	0.98
10	15	0.07	8.3	8.4	3.0	6	23	1169	1186	1167	1186	0.96
11	15	0.34	41	6.2	0.2	1	23	1204	1226	1204	1226	0.94
12	15	0.00017	0.02	16.6	1.5	1	23	1233	1255	1233	1255	0.97
13	15	0.0003	0.036	15.8	4.0	1	23	1261	1284	1261	1284	0.93
14	15	0.00016	0.019	16.7	0.9	1	23	1290	1312	1290	1312	0.97
15	15	3.7e-05	0.0044	18.7	0.7	1	23	1318	1340	1318	1340	0.98

Sequence Information

Coding Sequence: ATGGATTCTAAAGGACTTGATGAAGAAGTAGCAGGCGATAACGGAACCAGTGTGGGAGATTTCCTGCATGACTATGCGATAAAGTTTGCCAATTCAATAATTGGCCTAGAGGAGCCTCAGTTGCAGCCCTTCAATGATCCATCTACATTCGAGGAGTCCGACAGATTCCGCAGAGCTGCAGTGAATGATGATGAAACTACTGTGGCAGCTTCACTGCATGATTATGCCAAAAAATATTCGATTTTTGACCGGGATTGCGTTCTAGAAGAAGGTAACTTTCATACAGATAAGTTAAAGGAGATTGAGAATGAAACCAATTGTGCCACTGTAACAACTGATGGAGGAGTTACCCAGCATAATTATGCGAAAAAAATGACTGATGATTTAGAAAGCTTTCTTGATACTGATACCAGAAAAGAAACCAAACAGGGATCTAATGAGGTAACAAATCATGCTAGTGAGTGTGCTTCTGGACATGATTATGCTAAAAGAATTATTGATGCTCAAGATAACTTTCTTCAACCCAGTACCTTGAGAGAGACAGGAAAGGAATCAAATGAAAGTGTTACAAATAATGCCAGTGGATGTGTTTCTGTGCATGATTATGCAAAAAAATTGGTGAATGAGAATGAAAGCAGGGTTGAAAATATCTTTGATTTTAATATGCTAAGAGAGCAAGAAAATAATACCAATGAACCTTCTGAATGTGTGACAAATAAGGATGATAGCGGAGCTTCTCTGCACGATTATGCCAAGAAGATAGATGTTTTTGAAAACTTATTGTCTAATATGCTGTCTACAAGTATTTACAACTTAGATACAACCAGAGAAATGAGAGAATACAATCAGTATACCATTCGACATTGCAAACCAGTAACAAACAATGTGAATGAAATGTGTGTCCATAATTATGCCAAAAAAGTCACAAATGAGCTGGAAGGTTTAAAGAAGAATTGTAATATTGGTATAGATCCCAATTGCTTGGCAAATACCTTGAACCAAGATGGGAGAAGTTTGATACATAATTATGCAAAGAAAGTCGATGAAAATCTTGGAGGTTTCTCAGAAAATTCATTAGATAACGACAGAGTAGAAAACATTGGCAGAGAATCTAATAACAACACTATAGAACTTTGCAAACCAATGATAAATGATTATAGAAATCGTGAAGTGGCTTCCGTACACGATTATGCAAAACCGATTGAAAAAGTAATTGTTGGTGCTAAAACAAACTGTGACTTGAATATATCAGAAGGAACAAATGAAGATTTCCATAATGAATCAACAAAACTTTGTAAGTCAAAGATTAATGAAGATACAATTTGTGGAGGAGTATTTGTACATGATTATGCAAAAAAGATTACTCATGTTACTGATGATCATATTTTGTCAAAATCCATCTCGGACAAAGAGAGGCTAGAAGGAATGATTATGAACAAAGAGTCTGATGAATTTAGCAAATCAATGGCAAGCGATGGTAGAGTTTTTGGAATAGAATCTTTACATGATTATGCTAAAAAAATTACTAATATGACTGAACATGAGATTTTGCAAAGTGAAGTAGAAATGCTTCAAGGACATAGTAATGTAGAAGACGAATTTAATGTAGCTTTCAAATCAGTTGACAATAGAGTAGATAGAGAATCCAAAGAACTTGTCAACCCAGTGGCAGATGATGATGGAATATGTAGTGGAGTATCTGTGCATGATTATGCAAAAAAGGTTACAAATGGGTATGTTGGTCATGAGAGGATGTCTAAAGCCATCTATGACATAGAAATGCTTGAGGGAAAGAGTAATGAAGTAAATGAAGAATCAAGTAAACCTTACAAACTAGTGGAAAATAATCTTGCGATTTGTAATGAATCATCTTTAAATGATGATGAAAGGAAAATTATAGTGAGGATTGATTTTGGGAGTATGTCAAAACCGGATAGAGACAAAGAAATGCTAGAAGAGGAGACTAATTATGAAAATAACAAATCTAATGAACCTTGCAGATCAGTTGAGAATGAAATACATAATAATTACAAAGAACTTGATAAATCCGTGCCAAATAATGATGAACATTTTGTCGTTGAACATGGAAATTCGCTACATAACGTCTGTGATAAAGAAATGCTAGAAGTCAAGAGCAATGAAGTAGCTAAAGTATGTAATGGACTCTCCAAATCAGTTGAAACTGAAGCACTTGAAGGATTTGAAGAACTTGACGAATCGTTTTCAAATAATGATGTCGCTTTTGGAGAAGCACCTACTCATTATGCAAAGCAAATCACAGATAGAACTGTTGTCAATGAATTTATGTCAAGAACGCTCTGTGACAAAGAGATGATGGAAGTGGATAGTAACGGAATGGTTGATGTATTAAATGCGGATAATGATCTTTATAAACTATTGTTTAATATTGATGATGTTTGTGGAGGATCGATACAAGATTGTGTAAAAGAGATCACAAATGTGATTCATGATGGTTTTCCGGATAATGAATGTGATATCGAAATGTTGGAAGAGAGTACAACTAATGAAGTTTGTAAAGAATCAATGGAATATTTCAAGTCAGTTGAGAATGAAGTAAGGAAAGCTGATGAGCTTGATAAATCTGTTCTGAATGATGAAATTGTGGAAGAAGAAAGTGACGGTTTGTTGAAATCGAAAGTGTTAGAAATTGATAACGAAGAAGGTGATTCTGGCTGGCAATCCATAAGAACGGTGGCCTGTTTATTTTGTGATGACATGTTCGAAACAGCCTCTGCCTTACACCAGCATGTTTCAAAATACCATCGTGCTTTGAAAGAAAGGCTGAAAATTCAGGACAGCGAAATAAAGTGCAAACAGTGCAATAAAATGGTGAATTACTCGAAAATGTATGACCACATGACAACTCATTTACCAGCCGAAAACAAGTGCCAGTACTGCCATCTAGTTTTCCGTTCATTGAAGCGTTTAGAAAAGCATGTCAACTCACACATCGATACTGAACATTTTTGCTGTTATTGTGGAATGCAATTCAGAAATATCAAGAACAAACTTATCCACATCTCAAGGGTTCACGAAGAAAAAGAGAACGTTCTGTGTGAGATTTGCGGCCTTCAGTTTCAGTCACAGAAACAATTCAAAATTCACCTAAAAGAGATCCACCACAATACGTCTGAGGATTTCTGTTCTTATTGTGGGAAGAAATTCAGCAACGTTGCCAATAAGTTGAATCACATGAAATTGCACACAACAATGGATCGGCGAGAGATTTTGTGCGAAATTTGCGGCCGATTTTTCCTAGACCAGCGTAGTTTGGCCAGTCATCAACGGCTGCATGAAAATCAGAGCGATTTTGTTTGTGTAACGTGCACAAGATCATTCGAAACGCAAGCGGAACTTGATGAGCATGCCTCAACCCACCTGAAATCCTTCTCCTGTGAGGTGTGCTCCAAACGATTCCATAAGAAATGTCTAGTCCGGCAACATATGTTGAGTCATTCAGACATAAAGATGTACTCGTGTTTTTGTGGAGCGTCATTCAATCGGTTACGCAGTTTCAAGCGACACACCAACAAACACAAATCGATTCCAGAAAATCAGTCAGATGAGGCACAAACCTCGGCAAACAAGTTTATTTGTGGCATTTGTAAGCGCGATCTGAAAACAGAGACGAGACTGCGTTGGCACGAAGCACAGCACGCAGGCGAGAAGAAGCCGTTCGATTGTGACGTGTGCGGCTGTCGCTTTGCTAGATTGGCTTATTACAAGGTGCACATGATGAAGCACACCGGGGAAAGGCCCTACACATGCTCAGTCTGCCAGAAAGGCTTCCGCACTCAGCACACTCTACAGCAGCATACCGCACATGTTCACATGGACATCTATTCTCACAAATGTGACGACTGTGGACAGCTATTCAAACAACGCAATGCGCTTACTGCTCACAAAATAATACACACTGGTGACAAGCCATACGCGTGTTACATTTGTGGTCTCCGATACACGCAGAATGCAAGTCTCAGCAGACATTTGAAAAAGCATGCAGACTGTAACTTCACTCCATTATTAGCACCGTTTTCTGATGCCTTATTGGATATTGATTCAGTGCTGACTGCCCCGTTTTCTCTTACAACAGCAAACGAACCAGCTCTACTCACTTTTGAATAG
Protein Sequence: MDSKGLDEEVAGDNGTSVGDFLHDYAIKFANSIIGLEEPQLQPFNDPSTFEESDRFRRAAVNDDETTVAASLHDYAKKYSIFDRDCVLEEGNFHTDKLKEIENETNCATVTTDGGVTQHNYAKKMTDDLESFLDTDTRKETKQGSNEVTNHASECASGHDYAKRIIDAQDNFLQPSTLRETGKESNESVTNNASGCVSVHDYAKKLVNENESRVENIFDFNMLREQENNTNEPSECVTNKDDSGASLHDYAKKIDVFENLLSNMLSTSIYNLDTTREMREYNQYTIRHCKPVTNNVNEMCVHNYAKKVTNELEGLKKNCNIGIDPNCLANTLNQDGRSLIHNYAKKVDENLGGFSENSLDNDRVENIGRESNNNTIELCKPMINDYRNREVASVHDYAKPIEKVIVGAKTNCDLNISEGTNEDFHNESTKLCKSKINEDTICGGVFVHDYAKKITHVTDDHILSKSISDKERLEGMIMNKESDEFSKSMASDGRVFGIESLHDYAKKITNMTEHEILQSEVEMLQGHSNVEDEFNVAFKSVDNRVDRESKELVNPVADDDGICSGVSVHDYAKKVTNGYVGHERMSKAIYDIEMLEGKSNEVNEESSKPYKLVENNLAICNESSLNDDERKIIVRIDFGSMSKPDRDKEMLEEETNYENNKSNEPCRSVENEIHNNYKELDKSVPNNDEHFVVEHGNSLHNVCDKEMLEVKSNEVAKVCNGLSKSVETEALEGFEELDESFSNNDVAFGEAPTHYAKQITDRTVVNEFMSRTLCDKEMMEVDSNGMVDVLNADNDLYKLLFNIDDVCGGSIQDCVKEITNVIHDGFPDNECDIEMLEESTTNEVCKESMEYFKSVENEVRKADELDKSVLNDEIVEEESDGLLKSKVLEIDNEEGDSGWQSIRTVACLFCDDMFETASALHQHVSKYHRALKERLKIQDSEIKCKQCNKMVNYSKMYDHMTTHLPAENKCQYCHLVFRSLKRLEKHVNSHIDTEHFCCYCGMQFRNIKNKLIHISRVHEEKENVLCEICGLQFQSQKQFKIHLKEIHHNTSEDFCSYCGKKFSNVANKLNHMKLHTTMDRREILCEICGRFFLDQRSLASHQRLHENQSDFVCVTCTRSFETQAELDEHASTHLKSFSCEVCSKRFHKKCLVRQHMLSHSDIKMYSCFCGASFNRLRSFKRHTNKHKSIPENQSDEAQTSANKFICGICKRDLKTETRLRWHEAQHAGEKKPFDCDVCGCRFARLAYYKVHMMKHTGERPYTCSVCQKGFRTQHTLQQHTAHVHMDIYSHKCDDCGQLFKQRNALTAHKIIHTGDKPYACYICGLRYTQNASLSRHLKKHADCNFTPLLAPFSDALLDIDSVLTAPFSLTTANEPALLTFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00857946;
90% Identity: iTF_00857946;
80% Identity: -