Basic Information

Insect: Laodelphax striatellus
Gene Symbol: -
Assembly: GCA_014465815.1
Location: CM025328.1:3594555-3601262[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.033 3.9 9.4 1.3 1 23 973 996 973 996 0.97

2 14 1.9 2.2e+02 3.9 0.1 5 21 1003 1019 1001 1020 0.90

3 14 0.0061 0.72 11.7 0.2 1 23 1137 1159 1137 1159 0.96

4 14 0.0014 0.16 13.8 2.4 1 23 1163 1185 1163 1185 0.96

5 14 0.027 3.2 9.7 5.9 1 23 1195 1217 1195 1217 0.97

6 14 0.00037 0.043 15.6 0.3 1 23 1224 1246 1224 1246 0.99

7 14 0.001 0.12 14.2 2.7 2 23 1251 1272 1250 1273 0.94

8 14 0.00031 0.037 15.8 1.8 1 23 1319 1341 1319 1341 0.99

9 14 0.012 1.5 10.8 3.0 1 23 1367 1389 1367 1389 0.98

10 14 0.00054 0.065 15.0 2.3 1 23 1395 1417 1395 1417 0.97

11 14 0.54 64 5.6 0.3 3 23 1665 1686 1664 1686 0.94

12 14 6.3e-05 0.0075 18.0 0.2 1 23 1694 1716 1694 1716 0.98

13 14 3.5e-05 0.0041 18.8 0.4 1 23 1722 1744 1722 1744 0.98

14 14 1.8e-05 0.0022 19.7 0.5 1 23 1770 1792 1770 1792 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.033	3.9	9.4	1.3	1	23	973	996	973	996	0.97
2	14	1.9	2.2e+02	3.9	0.1	5	21	1003	1019	1001	1020	0.90
3	14	0.0061	0.72	11.7	0.2	1	23	1137	1159	1137	1159	0.96
4	14	0.0014	0.16	13.8	2.4	1	23	1163	1185	1163	1185	0.96
5	14	0.027	3.2	9.7	5.9	1	23	1195	1217	1195	1217	0.97
6	14	0.00037	0.043	15.6	0.3	1	23	1224	1246	1224	1246	0.99
7	14	0.001	0.12	14.2	2.7	2	23	1251	1272	1250	1273	0.94
8	14	0.00031	0.037	15.8	1.8	1	23	1319	1341	1319	1341	0.99
9	14	0.012	1.5	10.8	3.0	1	23	1367	1389	1367	1389	0.98
10	14	0.00054	0.065	15.0	2.3	1	23	1395	1417	1395	1417	0.97
11	14	0.54	64	5.6	0.3	3	23	1665	1686	1664	1686	0.94
12	14	6.3e-05	0.0075	18.0	0.2	1	23	1694	1716	1694	1716	0.98
13	14	3.5e-05	0.0041	18.8	0.4	1	23	1722	1744	1722	1744	0.98
14	14	1.8e-05	0.0022	19.7	0.5	1	23	1770	1792	1770	1792	0.98

Sequence Information

Coding Sequence: ATGACTGACTTGGGAGGTGGTACTCTACAACAAATGCCAAATGGTACCTTTCAACAAGTAGGAGGTGGTACCATCCAGCAAATGCCAAATGGAACATTTCAACAAGTGGGAGGTGGAACACTACAACAAATGCCAAATGGTACATTTCAACAAGTGGGAGGTGGTACCATTCAGCAAATGCCAAATGGAACATTTCAACAAGTGGGAGGTGGTACTATTCAACAAATGCCAGGTGGTACTATTCAACAAGTTCAAAGTGGTACAGTTCAACAGGTGTTGGGAGGTACAACTCAACAAATCCAAAGTAGTACAGCTCAAGTGTCAACTGGTACAACACAACAAGTTGGAAGTGGCATAGTTCAACAAGTGTCAGGTAGTGGAACTCAGCCAATCCAAAGTGGTGAAATTCAGCAAGTGGCAGGTGGTGCAATTCAACAAATTCAGACTGGTACAGTTCAACAGGTGGCTGGTGGTACTAATCATCAAGTTTCAAGTGGTACTATTCAACAAATTCAGAGTGGTACAGTTCAAGTGGCTGGTGGTACAACTCAACAAATTCAGAGTGGTACAATTCAACAAATTCAAGCTGGTACAGTTCAACAGGTGGCAGGCGGTACTATTCAACAAATTGCAAGTGGAACAATTCAGCAATTCTCCAGTGGAACAATTCAACAGTTGTCAGCTGGCACAGTACAGCAAATATCAAGTGGTTCAATCCAACAGGTTACAAATAGTACACTTCCACAGATGACATCTCAAAGCATGCCCATCACTAACGGATTAATTTCTCAAACAGCACAGAACATTTCATTCTCGAATAGTTATCTGTCACAGGCAAATCAGAACATTCAGATGGGAACAACATCCATGTTGCCACAAACTGTACCAATGTCAGGTTCGTTTTTGCCACAATTAACTCAAAACATGCAGCTTCCCAATGGCTTCATATTGCAGACCAGTCAACCAAACCTGCAGATTCCAAGCACTGTGCAACAACCTCAAGAAACTGAAGCTACATCCAGTGTAAATAACTCACAAGCAAGCCAACAAAACATTCAGACATTGCCGCAAGTGACCCAAACTACACCTAATGAAACTGTCACACAAAATGAGCCAAATGTTGCAATGCCTGCACCTTCACAATCAAATCAAAGAAGCACTAGTTCTACAAAGCCTCAAGTTATGCAAACTGTCAAGGTAGTTACTAAACGCACTGGAAATGGAGATGAAACAGAAACCACTATCATAGCTATAAAACGAAGAAAGAAGAAAGGCAGATATACTATTCTCAAACTGCGTAAACTTCCACAACCTACACCAAATCCAGCTCCTGTCCCTATTCCTCCTACTCCCACTCCTCCTCCTACTCCCACTCCTGCTCCAAAAAAGAATCCAGCTACAAAACCAGGTCTAAAACCCCTACTTCCTAAGGCTTCCCTTACTCCCCCAGTACAAACTATCATGTCCTTGTCAAATCCTCCACAATCAAACCAACAGAACATACAAACTACCAGCAGCGTATTGCCTCAAGTTTCCCAAAGTGCATCAAATAACCTGGCTCAACAGCAGAATGTTCTAGTTTCCAACCCTCTGTTGCCTCAAGCTTCACAGAATCTAATTTTGCCCAACAATGTACTCCCTCTAACATCGCAACAAGGCTTCACATTGACTGGCAATTTGTTACCACAGACAGTTCAGAGCAACAACGTACTGCCTTTAGCCTCTCAAAACATTTCAATAGGTAATAATCTATTACCACAAACTGTACAAAACAATACTCTACTGCCTCTAACCTCTCAAAATATCTCATTAGCCAATAATCTGATTCCACAAACAGTTCAGAGTAACAATGTCCTTCCTTTGACCTCTCAAAATATTACATCAACAAATAATCTATTACCACAGACCGTTGCAAGCAGCAATATACTTCCAGAAACATCTCAACAAACATTTTCACTGGCTGGCAATCTGATACCGCAGACAGTACAAAGCAGTAATGTTCTTCCTTTAGCGGGACAAAACATGTCACTAACCAGTAATTCAGTAACTCAGGTTGCTCAGGGTAGTAACATGCTGTCTCTAACCTCTCAGAATATTTCCACCACCAATTCATTGCCACAAATTGTGAAGAAACCACCTGTGTCAACCAGCTCGTCACCAAAAACAGCAGAAAAGAAAGAGACACTACATAAAAGTGCCATGCCCAATTTACTGGCTGAATTACTGAAAGATCCAATGAAAAAAGGCAGTGCAATCACAAAGAATATACCAATTGCACCAAAAACAGGGAATATACCAATTGCACCAAAAACAGGGAATATACCAATTGCACCAAAAACACCTCTTGATGACAGTGATGAAGAGGAAGACATTAAACCTGAACCAAAATATCTAACCAGAAGTGCTAAGAGAGAACTGGAAAATCTGAACAAAAAACCAGAGGAGAAAACTTCATCATCTAAACCTGCCTCCTCAGCACCACCAACTTCTTCACCAAAACTAGTCCCCATATTGCCATCAACTTCAAAACTTCCCATATTATTACCAAACTCTTCAACTCAACCTGTTCCCATACTGCCAAATTCATCTAAACTGGTTGCCATATTGCCTGCACCATCTGGAGATCAAACATCAACATCTATAGATGAAAAAGAGAGTGACAAAATGGAGGTGGATGATGAAAAACAAAGTGAAAACATACAAGTTGAAGATAATCAGGAGATAGTGATCAAAAAAGAGGTGGAAGATGAGACCAGTAATCCTCAAACGGTAGTTGAAGGTGATATAGAACAGAAGACAAGTGAAGGATTATCAGCTAGTTTGAACAAAACTATGAATAATTCGTTAATAATCAAGTCTTCTCTTAATCATCTACCACTAATTCTGCCAAAACCTCCCAGCAGCAGCAGCAGCGAGTTTGAGTGTCGCAAATGCCACGCCGAATTCTCCAACGTACTTGATCTTAGAATGCACGAGCGTATCTACCATGGCAAGAGCTATCCATGTGTTTGTGGCAAAGGTTTTGAGACTATGATTGGACTGAAAATACACAGGCACACCTGCTCAATGGTCAGCAATCCTTGTGAAATGAATGCTGCACCGACTGGAGACTATCTCATTGCAGTCAAGGTGGATGACAATAATGGCAAACAAATCGATAAGCCAAGTAGTTTGGAGGAGGATGGATCTGAGATGATAGATCGTGTTGCAGATGAGGAAGAGGATAGTAGACCGATCAAAGAAGAGTTAGACAAAGATGGTGTTGATGAAGATAATGAGGACGAGGAGGAGGAGGAAAAGATAGTGATTGCTGAAGATGAAAAATCAAAAAAGTGTTCACATTGTAGATTGAATGTGCGCAACATGGACTACCACTTGGCTCGTTGCAAACTGAAAGCAAATGGAAAATACGCATGTGAAGTATGTGCTAAAATATTCCCCAGCTCCTTCCACGTTAATGAACACATGGAAGAACATGAACGCAAGTACCTTTGTAAGATCTGCAAACGTTCGTTTGAGAAAATGAGAGCTCTACGCAACCACATGTTCAAACACACGCGCGAAATCACAGACACCAAAAAACACAAATGCGATAAGTGTCATTTTACATTCAGGTTGAAAACGGAGTTGATGGATCACTATATTAGTCATTCAGATAACATTCCAGTGTACAGGTGCGATGATTGTAACCTTATATTTTCTTCGGAGAGAGTACTACAGACTCACTTGGAAACACACTCCAATCGCCTCAAGTGTGACAAGTGCCGTCAGTATTTCAGTTCTAGAGTACTGTTACAACGTCACATAAACGAGCATCACGACCAACCTAATTCTAATCCAATATCTTATCCGGCCGATATAACTCCGAGAGTTGTTGAAAGTAATGTGAACACTGACATATTCGATAGTGAGTTTGTGAAAATCGATAGCTCTCCGCAAGACAATAATATTCTTTACAAATGTAAACTATGCACGCGTTTGTTTGCTTCGGAGAGCAATGTAAAAACACATCTGAAAACGCATTACACTAAGCAATTGGATGATACACGTTTAGAGGGCAGTTTTGAAGCCAATCTATCCCAACAAAATGTGCGTGTTTTCAAGTGTAAACTGTGTGGCTGCAGGTTTTCATCGGAGAAAGTGGTGTTGACTCATATTAAGTCGCACTTTTTAAAGCGTCCCTTTGCTTGTAATATCTGTGGCTGTACGTACGACACTAGTGAAAAGTTGAAACAACATGAGCGGTATCACGAGGAAACAAAGACGACTAAGATCGAATCGCAACAGTTGGCCGCTAAAAATGAGTCACAATCGACTAGCAATGAGTCAAAATCAATCAACAATGAGTCACAGTTGAGTGTAAACGTTTCAGAAATCTCTGTACACGAACCAGAGGTGTCCATGAACGTATCAGAGATGTCTATGCATGTACCGGAGGTATCGTTGAACGTATCAGAAATGACTGTGAATGTAGCTGAGATGAATTTGTTTCCTACTGAACAAATGGATACAACTGAAGCTGAGAATGATGCTGCTAAGAAGACGGAGAATGAGTCTGATGAAGTATTGAAAGTTGCCAGTTGCAACGATGGTGGTGATAATGAAATGGAGGAGTCGGAAAGTATGTTCATTAAGATGGAAAGACCTGACTCGCCCGATGACGAACAGCAAGAAGAAGAAGTGGAGATTCCGGAACCCGAGATAGATTTCAAGGTTGAAGAAGGAGTTGAACATGAAAGTGAAAGTGAAAGTACGGCAGCTTTTCCATTCTCACTGGACTTCTCTTCTCTGGGAAATCATTCCGATGAAGAAGAGGTGGACGAGAACGCGCTCACACCCGAAGTGAACTTGGAAGAGAGCGAAGGCGATATCAATCCCAACATCACTGATGAAACCCCGTCGGATGGCAAAAAATACTGTGTCAAGTGTAAACAGCCCTACCGTAGCTTTAAGGCGCATTTTTTCAGGTGTCCCATGAAGTACTCGCGTCTGTGTAAACCATGCGGAAGGTATTTCAAGAACGAAATCGGCTACAATATACATTACAACAAAATGCATCTACAAAAAAGCAGCGAAGTATTCAGTTGCGATAAATGTCCGGCCACTTTCCGATTGGTGTCCGAGTTGAACGCTCATCTACGGACACACTCCAATATTCCAGTATTCACTTGTGGTCAATGCGGCGTCCGATTTTCATCGGAAAAAGCACTCAACACACATTTGAATACACATTTCGTCGGCAAGAACTCGAACGAAAGCATGAAATTGAAACATGAGAACCCAAGGATCGTTCCGAAAGACACTAATTTCGAATGTAACATTTGCGACAAGAACTTTAGTGCTCACAGTGATTTAGTTGAACATATTAAAATTCATTTCACCAGGAAACGGTCGTATACTTATTTTGGCGGTGTGAAACTGATGTAG
Protein Sequence: MTDLGGGTLQQMPNGTFQQVGGGTIQQMPNGTFQQVGGGTLQQMPNGTFQQVGGGTIQQMPNGTFQQVGGGTIQQMPGGTIQQVQSGTVQQVLGGTTQQIQSSTAQVSTGTTQQVGSGIVQQVSGSGTQPIQSGEIQQVAGGAIQQIQTGTVQQVAGGTNHQVSSGTIQQIQSGTVQVAGGTTQQIQSGTIQQIQAGTVQQVAGGTIQQIASGTIQQFSSGTIQQLSAGTVQQISSGSIQQVTNSTLPQMTSQSMPITNGLISQTAQNISFSNSYLSQANQNIQMGTTSMLPQTVPMSGSFLPQLTQNMQLPNGFILQTSQPNLQIPSTVQQPQETEATSSVNNSQASQQNIQTLPQVTQTTPNETVTQNEPNVAMPAPSQSNQRSTSSTKPQVMQTVKVVTKRTGNGDETETTIIAIKRRKKKGRYTILKLRKLPQPTPNPAPVPIPPTPTPPPTPTPAPKKNPATKPGLKPLLPKASLTPPVQTIMSLSNPPQSNQQNIQTTSSVLPQVSQSASNNLAQQQNVLVSNPLLPQASQNLILPNNVLPLTSQQGFTLTGNLLPQTVQSNNVLPLASQNISIGNNLLPQTVQNNTLLPLTSQNISLANNLIPQTVQSNNVLPLTSQNITSTNNLLPQTVASSNILPETSQQTFSLAGNLIPQTVQSSNVLPLAGQNMSLTSNSVTQVAQGSNMLSLTSQNISTTNSLPQIVKKPPVSTSSSPKTAEKKETLHKSAMPNLLAELLKDPMKKGSAITKNIPIAPKTGNIPIAPKTGNIPIAPKTPLDDSDEEEDIKPEPKYLTRSAKRELENLNKKPEEKTSSSKPASSAPPTSSPKLVPILPSTSKLPILLPNSSTQPVPILPNSSKLVAILPAPSGDQTSTSIDEKESDKMEVDDEKQSENIQVEDNQEIVIKKEVEDETSNPQTVVEGDIEQKTSEGLSASLNKTMNNSLIIKSSLNHLPLILPKPPSSSSSEFECRKCHAEFSNVLDLRMHERIYHGKSYPCVCGKGFETMIGLKIHRHTCSMVSNPCEMNAAPTGDYLIAVKVDDNNGKQIDKPSSLEEDGSEMIDRVADEEEDSRPIKEELDKDGVDEDNEDEEEEEKIVIAEDEKSKKCSHCRLNVRNMDYHLARCKLKANGKYACEVCAKIFPSSFHVNEHMEEHERKYLCKICKRSFEKMRALRNHMFKHTREITDTKKHKCDKCHFTFRLKTELMDHYISHSDNIPVYRCDDCNLIFSSERVLQTHLETHSNRLKCDKCRQYFSSRVLLQRHINEHHDQPNSNPISYPADITPRVVESNVNTDIFDSEFVKIDSSPQDNNILYKCKLCTRLFASESNVKTHLKTHYTKQLDDTRLEGSFEANLSQQNVRVFKCKLCGCRFSSEKVVLTHIKSHFLKRPFACNICGCTYDTSEKLKQHERYHEETKTTKIESQQLAAKNESQSTSNESKSINNESQLSVNVSEISVHEPEVSMNVSEMSMHVPEVSLNVSEMTVNVAEMNLFPTEQMDTTEAENDAAKKTENESDEVLKVASCNDGGDNEMEESESMFIKMERPDSPDDEQQEEEVEIPEPEIDFKVEEGVEHESESESTAAFPFSLDFSSLGNHSDEEEVDENALTPEVNLEESEGDINPNITDETPSDGKKYCVKCKQPYRSFKAHFFRCPMKYSRLCKPCGRYFKNEIGYNIHYNKMHLQKSSEVFSCDKCPATFRLVSELNAHLRTHSNIPVFTCGQCGVRFSSEKALNTHLNTHFVGKNSNESMKLKHENPRIVPKDTNFECNICDKNFSAHSDLVEHIKIHFTRKRSYTYFGGVKLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -