Basic Information

Insect: Laodelphax striatellus
Gene Symbol: prdm10
Assembly: GCA_014465815.1
Location: CM025325.1:10251859-10289233[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3e-05 0.0035 19.0 0.9 2 23 497 518 496 518 0.96

2 14 8.3e-05 0.0099 17.6 1.2 1 23 565 587 565 587 0.98

3 14 0.32 38 6.3 6.8 1 23 592 615 592 615 0.98

4 14 0.0032 0.38 12.6 0.4 2 23 641 662 640 662 0.94

5 14 0.0013 0.16 13.8 0.4 2 23 699 720 698 720 0.97

6 14 0.0017 0.21 13.4 3.6 1 23 741 763 741 763 0.97

7 14 0.00065 0.078 14.8 0.8 2 23 769 790 768 790 0.98

8 14 0.0019 0.23 13.3 1.4 1 23 796 818 796 818 0.97

9 14 0.00015 0.018 16.7 3.5 1 23 824 847 824 847 0.98

10 14 0.0024 0.29 13.0 4.8 1 23 852 874 852 874 0.97

11 14 8.3e-06 0.00099 20.7 1.8 1 23 880 903 880 903 0.94

12 14 0.026 3 9.8 2.1 1 23 940 963 940 963 0.95

13 14 0.0011 0.13 14.1 2.3 1 23 985 1008 985 1008 0.97

14 14 0.0042 0.5 12.2 2.6 3 23 1048 1069 1047 1069 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3e-05	0.0035	19.0	0.9	2	23	497	518	496	518	0.96
2	14	8.3e-05	0.0099	17.6	1.2	1	23	565	587	565	587	0.98
3	14	0.32	38	6.3	6.8	1	23	592	615	592	615	0.98
4	14	0.0032	0.38	12.6	0.4	2	23	641	662	640	662	0.94
5	14	0.0013	0.16	13.8	0.4	2	23	699	720	698	720	0.97
6	14	0.0017	0.21	13.4	3.6	1	23	741	763	741	763	0.97
7	14	0.00065	0.078	14.8	0.8	2	23	769	790	768	790	0.98
8	14	0.0019	0.23	13.3	1.4	1	23	796	818	796	818	0.97
9	14	0.00015	0.018	16.7	3.5	1	23	824	847	824	847	0.98
10	14	0.0024	0.29	13.0	4.8	1	23	852	874	852	874	0.97
11	14	8.3e-06	0.00099	20.7	1.8	1	23	880	903	880	903	0.94
12	14	0.026	3	9.8	2.1	1	23	940	963	940	963	0.95
13	14	0.0011	0.13	14.1	2.3	1	23	985	1008	985	1008	0.97
14	14	0.0042	0.5	12.2	2.6	3	23	1048	1069	1047	1069	0.98

Sequence Information

Coding Sequence: ATGGAGGGAGGCACAAAGGAGGACGATGATCTAGGGGCACACGAGTGGCCTCCAGATACATCGGCTGTCAAGGATCCCGACCCCAAGCTGCTATTTCTCACGGTGGAATACGTTGGTGAGGAGGGAGGCGGGTCGCTGGGCTTTGGTAGCGGCGACTCGCCGTTCCAGTCGCTGCCGCTGGCGCTGGATGCAGCCGACATGGGCTGCGGCCACTACTCGCCCGTCGAGGCCGCGTTCGCGTCGCTGCAGCCGCCATCGGCCACGGCCCCACCGACCACCAACGACCGGCATGATGAAGCAGTTTTTCTGCCTGACGAGATTGTGGAACAACAGGAGCAGTCGCTGATGAGCGCATCACCAGCTGATCATCAGCTGATCAACTCATCGGCTGATCATCAGCAGCGCACTTCACCGCAACTGATGGTCGCTCCAAGTCCCTTTACCCCCTCCACCACGGCTGCAGTTGTGACGTCATCATCGGAGGCTAGCTATGTGACGTCAGAGGCGGCCAATTACGTCTACCAGCCATCGCCGCCACTCAGTGCTGCCGCCCGGAGCGAGTTCATTCTGCCCGCTGGCGATCCTTCTCAAACGAATCCTAGTATGCTGGCTGATGGTGCCAATTCTCTGCCAACGGATCAGCACCTCGCTGGTCTGCAGGATAATATGAAAGTTGGCGATGGAGTTGGACAGATCGAGTTACTTTTGGATGATGGAGGGGTTGCACTAACTGTCATTGATCAGGATTCAGATGTTATCCAGCTCACTTTCGCACGCACACAACCAGCCGGCAGCGGCCGCCAGCCGGCAGCGAGTGTCACAACGTCACAACATAAATACAGTATTTTAGTGGGAGTGGCCATAACCGAGTGGGTTAAGTGCTGGCTTTGTAACCTAGAGGTCCCGAGTTCAAACCCAGGTTTGGTGGTCGAAACGAGCGAAAATGGTGAACTACGGTTTGTGAGTTTTCTGGATACGGTTGAAACCGAAAATCAGCTGGAAGCAATCGAGGAACAGCCTCAATCACCAATGACACTCATCATCGACGAAACCATTTCCAATGTCTCATCTCCCGCGCAGGGTGAATCGATTGCTACCAATAATGGACCATTTTTGTACGGCATATTCGCAAGGAAGACGATTCCGAACCGAACACAGTTCGGGCCGATCGAAGGCGTTCTGCTGAAGTGCGAAGATGTTTGGACCGACTTCTCGCCGCTGGAACTGCTCGTCGAAACTGAAAATGGCGACATCCATCGTCTCGATGTGTCCAATGAAGACACATCGAACTGGATGCGTTTCGTGCAGCCGGCGAAGAATGCCAAAGAACAGAACCTGGTGCTGAGTCAGCAAGGCCACTCGCTCTACTTCACAACAACGCGCGCCGTGCATCCACGCCAGCAGCTGCTAGTGTGGTACAGCCCGTCCTACGCAGCCAAGCGCAATTTGCCGCTTCTCCAACCACCAGTTATAGAAAAAACCTACTGGTCCTGCTTCGAATGCAATCAGAAGTTTAAATCGTCAGAAGAGCTGCAGAAACATCTTAATGTACATGAAAGCGAAAGGGAGGTACGAAATTTCGAACTGATGAAAACAAGATCAGCCTCGAAGAGGAACGGGCTTCAGCTTGCATTGCGCGAAAAGTCTCAGAATATTGATGATCCTCCTCCAAAGAAACAGAGACCGACCTCATTCGAGTGTTCAGCCTGTAGTCGAAGCTTTCCGAGAATGTACAGCTTGAAGCGTCATCTTCGCCTCCATTACAGCAAGAAGTTCAAATGTCCGCACTGCAGCCTCGAGTTCTGTCATGGCGATAATCGCGACAAACATGTGAGAAAGCAGCACAGTGACAAATGCGTTGACCTGAGAGCCTATTTCAATAGTTCGGTGAATACGGACAAGAAAAATGATCAACAATGGATTTGCAAGCACTGCAACCTGACATTTGCCAGTGCTTCAGTACTGAACTTGCACACACTGGCTCACGCCGCTGACAATCTCGAAGAGGAAACATCGGGTGTGCTGACTGGGCTGCCGTCTGAATTCACCAACATCTACCATGACGGCGAATTCATGGTAGAGAACGGCTCCGTGCAATGTCCTCAGTGCACTAAGTTGTTTCAAACAAAACGAGAATTGATAGAGCACGTATCGACTCACGGCCAACTAAAGGAGGACGAACAAGAGAATGTGCTGGAAAACTTTCCTGACGAAAATATGTTCAGCTGCATGTACTGTACTCGGAGCTTTGACACTGCTGATTGTCTCAAGCAACACAGCCTGACTCATGTCAGTACAGCAGTGCAGTGCAACATTTGTTTCAAACGATTCCTGAACAACTCAGCACTGACCGGACACATGAAGTCTCATGCCATATTGAAGTGTTTCGAATGTCCAATGTGCAAGGAAAGTTTCGATCACATGTTGTCTCTGAAATCGCATGTTCAAAATCATGCCAACAATGGAATCTTCACCTGCCCCCATTGCAAAAAGGAATTTGACGAATATAGCCAGATACGAAAGCACATTCGATCTTTTCATTGCGATCGCAAATTCATTTGCGAATATTGTCAAAAACAATTTCACACCCAAGACAAACTGAGGATGCATAAGCTCAAGCACTCCGACCACCGTGAATTTCTCTGCGCCAACTGCGGCAAACAGTTTAAGCGCAAGGACAAGCTGCAGGAGCACATGAAACGAATGCACACATCAGAGCGAGACCTGAATGCGCAACCGAAATCACCGCGAACTCCTTTGCCCAAGAAGTTCATTCCGAAAGTTATTCTTGGATCTTCGGATTACGAGCGATTTGTTTTCAAGTGTCACAAGTGCATGCTGGGATTCAAGCGACGTGGTATGCTGGTCAACCATCTGGCTAACAGGCATCCAGAGATCACTCCCGACTCAGTACCCGAACTCAACCTGCCCATCCTCAAGACCACTCGCGATTACTATTGTCAATACTGCGAGAAGATTTACAAAAGCAGCTCCAAAAGGAAAGCCCATATTCTAAAGAATCATCCAGGATCTGCATTGCCGATGAGCAATCGTCAAAAGGGCGGAGTGCCGGAGATCCCGGGCCAGCCGAATCCGACGTTCTCGCAGACAGTGGGCAGTGTGACGACGACGCCGCACGGCTGCCAGTGGTGCCACAAGCAGTACGCGTCCAAGGCCAAGCTGCTGCAGCACCAGCGCAAGAAACATCTCAATCTGCTGCCTTCCGAGCAACAGCAACCTAGGCCCGGTAAATGCATGTCTAGTGAGAGTGGCGACCAACAGCCGCCGCCACCAATCATCGAGCCGGCCAATCAGAGCGCGGAGCAGCCGGAAGGGGGCGTGGCCGGAGGCGGAGCTGAGGGCGGCGACACAGCCGTTGCCATGGCAACTGCAGGACCAAACGACACCGCCGCCATTGCTCTGGCCCCAGCTCATTGCCAGCTGACACTGTCGCACGGCCTTACTGATACCATTCTAACTGAATATGAAATTGCAACTGGTGATACGGACATTACTGAGACCGGCATTGTTATCGATGCAGCTACTTTGAAACGTGCAATCAAGAGCGGCGACACACTGCTAGGCGAGCTGAGCATGAACCTGGGCCTGGGCGCGTACTTGTCGCAGGAACAGTGCCTGAAGCTGATCCAAGTGGTGGCTGACGAGTCGCTGTACTCGCCCTACACTCTGCGCTGA
Protein Sequence: MEGGTKEDDDLGAHEWPPDTSAVKDPDPKLLFLTVEYVGEEGGGSLGFGSGDSPFQSLPLALDAADMGCGHYSPVEAAFASLQPPSATAPPTTNDRHDEAVFLPDEIVEQQEQSLMSASPADHQLINSSADHQQRTSPQLMVAPSPFTPSTTAAVVTSSSEASYVTSEAANYVYQPSPPLSAAARSEFILPAGDPSQTNPSMLADGANSLPTDQHLAGLQDNMKVGDGVGQIELLLDDGGVALTVIDQDSDVIQLTFARTQPAGSGRQPAASVTTSQHKYSILVGVAITEWVKCWLCNLEVPSSNPGLVVETSENGELRFVSFLDTVETENQLEAIEEQPQSPMTLIIDETISNVSSPAQGESIATNNGPFLYGIFARKTIPNRTQFGPIEGVLLKCEDVWTDFSPLELLVETENGDIHRLDVSNEDTSNWMRFVQPAKNAKEQNLVLSQQGHSLYFTTTRAVHPRQQLLVWYSPSYAAKRNLPLLQPPVIEKTYWSCFECNQKFKSSEELQKHLNVHESEREVRNFELMKTRSASKRNGLQLALREKSQNIDDPPPKKQRPTSFECSACSRSFPRMYSLKRHLRLHYSKKFKCPHCSLEFCHGDNRDKHVRKQHSDKCVDLRAYFNSSVNTDKKNDQQWICKHCNLTFASASVLNLHTLAHAADNLEEETSGVLTGLPSEFTNIYHDGEFMVENGSVQCPQCTKLFQTKRELIEHVSTHGQLKEDEQENVLENFPDENMFSCMYCTRSFDTADCLKQHSLTHVSTAVQCNICFKRFLNNSALTGHMKSHAILKCFECPMCKESFDHMLSLKSHVQNHANNGIFTCPHCKKEFDEYSQIRKHIRSFHCDRKFICEYCQKQFHTQDKLRMHKLKHSDHREFLCANCGKQFKRKDKLQEHMKRMHTSERDLNAQPKSPRTPLPKKFIPKVILGSSDYERFVFKCHKCMLGFKRRGMLVNHLANRHPEITPDSVPELNLPILKTTRDYYCQYCEKIYKSSSKRKAHILKNHPGSALPMSNRQKGGVPEIPGQPNPTFSQTVGSVTTTPHGCQWCHKQYASKAKLLQHQRKKHLNLLPSEQQQPRPGKCMSSESGDQQPPPPIIEPANQSAEQPEGGVAGGGAEGGDTAVAMATAGPNDTAAIALAPAHCQLTLSHGLTDTILTEYEIATGDTDITETGIVIDAATLKRAIKSGDTLLGELSMNLGLGAYLSQEQCLKLIQVVADESLYSPYTLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -