Basic Information

Insect: Laodelphax striatellus
Gene Symbol: -
Assembly: GCA_014465815.1
Location: CM025321.1:30024096-30034088[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5e-06 0.00059 21.4 0.8 1 23 211 233 211 233 0.96

2 11 5.5e-05 0.0066 18.2 0.2 2 23 236 258 235 258 0.96

3 11 0.00016 0.019 16.7 0.3 1 23 321 343 321 343 0.95

4 11 0.00031 0.037 15.8 2.0 1 23 349 371 349 371 0.99

5 11 0.00029 0.035 15.9 2.3 1 23 377 399 377 399 0.98

6 11 0.0019 0.23 13.3 1.7 1 23 405 427 405 427 0.96

7 11 2.6e-05 0.0031 19.2 1.4 1 23 435 457 435 457 0.97

8 11 0.0035 0.42 12.5 0.1 1 23 463 485 463 485 0.95

9 11 0.0022 0.26 13.1 3.3 1 21 491 511 491 513 0.93

10 11 7.7e-05 0.0092 17.7 0.4 1 23 519 541 519 541 0.98

11 11 0.00093 0.11 14.3 0.2 1 23 547 569 547 569 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5e-06	0.00059	21.4	0.8	1	23	211	233	211	233	0.96
2	11	5.5e-05	0.0066	18.2	0.2	2	23	236	258	235	258	0.96
3	11	0.00016	0.019	16.7	0.3	1	23	321	343	321	343	0.95
4	11	0.00031	0.037	15.8	2.0	1	23	349	371	349	371	0.99
5	11	0.00029	0.035	15.9	2.3	1	23	377	399	377	399	0.98
6	11	0.0019	0.23	13.3	1.7	1	23	405	427	405	427	0.96
7	11	2.6e-05	0.0031	19.2	1.4	1	23	435	457	435	457	0.97
8	11	0.0035	0.42	12.5	0.1	1	23	463	485	463	485	0.95
9	11	0.0022	0.26	13.1	3.3	1	21	491	511	491	513	0.93
10	11	7.7e-05	0.0092	17.7	0.4	1	23	519	541	519	541	0.98
11	11	0.00093	0.11	14.3	0.2	1	23	547	569	547	569	0.98

Sequence Information

Coding Sequence: ATGGTATGCGAAGAATGTGTTTATAAACTTGATCTTCTTCACGATTTTAGAGAAAATAGTCTCAAAACTGATGCCATATTGAATGATATAGTGAAAGGACTGCCATCGAATCAAGACTTGGATAAAGATCTTAAGTCTACCGATGTGATAACTCCTCTAGATTTGCCGGAAAAGATTGATAAGACGTGTGATTCGAAGTTGGGCATTGTGGCCAGAGAGTCGAGCCCACCAGCTGCTGCAAGTTTGCTTAATACTCCACCACTGCCCCCTCCACCTTCAGCCACTACTCTAATAATCAGCAATGTTCATTCAATGCCACACAATTTGAAAAATGAGCCAGACATATTGGTCAAAGTCGAAGAAATGGCCACCACCTCTATAATTGAGTCATCGCACTGTGAACATAATATAACATCGGAAACTACCTCTGATTTGGAATCAGTTAGTTGCTGTGACTCTGAAGATTTCTCGAATGCAATCAATTCTACAAGATCAGATCTGCAGGAGCAGCCGAGAGATGCTCTGGTTATCGATATGAAACAATCACCTGAGAAGATCATTACAACGCCATCGTTTGCTGAAAGCAACGAGTTCCTAGTGCAAATGCCACCGGAGCAAACAGCGGCGTGGTTTTTCTGCAATATTTGCGGCAAAACATACAGCAGTAAAGAGGAGTTCAACGTACATTACGAGGTGCACTGGAACAAGTGCCACGATTGTGGAGCGATCTTCACCGACGAGGAAGCGCTGGTTGCGCATCGCAGGCAAGTGCACACTAAGAAGACAGATGCGGCTGATGATGGTAAGCTGGGTGAGGAGGAGGAGGAGGAGCAAGAGGAGGGTGATGGCGGCAGTAAGAAGGCAGCAGCTGGAACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGCCGGCACACAGGCGAGAAGCCATTCAAGTGCAACTCTTGCGACAAGGCGTTTCGCTCGAAGATCGGACTGGCACAGCACGAAGCACAGCACACCGGCCAATACGAGTACACTTGCCAGCTGTGCGGCAAGGGCTTCCAGTGCAAGTCCTATCTGGCCGTGCACCAGCGAGTGCACAATGACAACAAGCCCTACACGTGTAGCAAGTGTGCTAAACAGTTCAAAACAAAACAGAGCCTATTGGATCATGAGAACCGGCACCTTGGAGTGAAGCCGTACCTGTGTGAGACGTGCGGCAGAGGCTTCATCACAAAGGGTCTGTGCAAGTCGCATCAGCGCGTGCATTCGGGCGGCGACAATCGCCAGCATCCGTGTCCGGTGTGCCACAAGCTGTTTGTCAGCAAATCGTACCTGGCGACTCACGCACGCATCCACACCGGCGAGAAGCCGTTCATCTGCGAGGTGTGCGGCAAGGGCTTCCTGACGCGCGTCGACCTGCGCATCCACTCGACCGTGCACACCGGCGAGAAGAGCTACATGTGCGAAGTGTGTGGCAAGGCGTTTGCGCGGCGCGACGCACTGCGCTGCCACAGGCGGTGCCACACCGGCGAGCGGCCCTACCGCTGCGACGTCTGCGGCCAGAGCTTCACTCAGTTCTCGCCGATGGTCATCCACCGGCGGCTGCACACTGGCGAGCGGCCCTACGCCTGCGACATTTGTGCCGCCACTTTTGTGTCGCGCTCCACCATGCTGGCGCATCGCAAAAAGCACGCCGCCGACACCAAACCGCCCCCCACCACCACCACCACCAGCTGA
Protein Sequence: MVCEECVYKLDLLHDFRENSLKTDAILNDIVKGLPSNQDLDKDLKSTDVITPLDLPEKIDKTCDSKLGIVARESSPPAAASLLNTPPLPPPPSATTLIISNVHSMPHNLKNEPDILVKVEEMATTSIIESSHCEHNITSETTSDLESVSCCDSEDFSNAINSTRSDLQEQPRDALVIDMKQSPEKIITTPSFAESNEFLVQMPPEQTAAWFFCNICGKTYSSKEEFNVHYEVHWNKCHDCGAIFTDEEALVAHRRQVHTKKTDAADDGKLGEEEEEEQEEGDGGSKKAAAGTXXXXXXXXXXXXXXXXXXXMRRHTGEKPFKCNSCDKAFRSKIGLAQHEAQHTGQYEYTCQLCGKGFQCKSYLAVHQRVHNDNKPYTCSKCAKQFKTKQSLLDHENRHLGVKPYLCETCGRGFITKGLCKSHQRVHSGGDNRQHPCPVCHKLFVSKSYLATHARIHTGEKPFICEVCGKGFLTRVDLRIHSTVHTGEKSYMCEVCGKAFARRDALRCHRRCHTGERPYRCDVCGQSFTQFSPMVIHRRLHTGERPYACDICAATFVSRSTMLAHRKKHAADTKPPPTTTTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -