Lstr020042.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Laodelphax striatellus
Gene Symbol
-
Assembly
GCA_014465815.1
Location
CM025332.1:17861097-17873910[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 8.8e-06 0.001 20.7 0.3 1 23 353 375 353 375 0.98
2 9 0.036 4.3 9.3 2.3 1 23 386 408 386 408 0.97
3 9 3.7e-07 4.4e-05 25.0 1.2 2 23 486 508 485 508 0.95
4 9 0.00046 0.055 15.3 2.3 2 23 626 647 625 647 0.96
5 9 2.9e-06 0.00034 22.2 0.3 1 23 653 675 653 675 0.98
6 9 0.00018 0.021 16.6 4.3 1 23 681 704 681 704 0.96
7 9 1.4e-07 1.7e-05 26.3 1.1 1 23 710 732 710 732 0.99
8 9 1.1e-06 0.00013 23.5 2.2 1 23 738 760 738 760 0.99
9 9 4.6e-05 0.0054 18.4 5.4 1 23 766 788 766 788 0.97

Sequence Information

Coding Sequence
ATGATGGAAACAGTAGAAGTAACCGACCACCGAAACGGTGGTCAGGACCTCCTCACCAACGTCCCTGTCCAAATCGTCTCCACGGAGGGCGGTCGTGTCGAGGTTATTTCCAAAATGACACCCGTCACTGTCAACGCAATCATGCCTAATCAAGACATCATGACGGCCCAGTACATAAACCTGCACCGAATGCCAGCGGAGCATTTGAATAAAGTGATAGTCACCGATCCGATATCGGGAGAACTTATCGCTCATCATGTTGATTTATCAGGGTCTGATTTCGGACACCATACGGTGACCGCGCAATACTATGACACCGAAGAATTGTTGGCCCATGGTTTGACAGAAGACGAACGGAGACTGGCGGCTGAATTGGTTGCTGCCCAGTTGAAACAACACCAAGGTGCGACAATTCTGACCACCCAGGATTTGTTGAATGCTAAGACGTTGACAAGTTTGGGGACTGTTAGTATTGATAAGTCGAATCTGTCAGCGGCGATTGTGACCGGCTATATACAGACTTTGGACGATGTGCAGCAGCAGCAGATAATGCAGCAACAGGATAATCAGGAGCGGTGTATTATGAAGATCTATCCCACGCAACCGGGGCAGCAGGAGTTGCAGGTGCTGAATAGGACTTCAACGCAACCGCTGCCTCCATTGAAGAAAGTTCTTTCCAGCCAGTCAATGATGGTGAGAAACAAGTTCTCAGAAAGTCCTGGAATAATGGTCGAACTGCAAAATTCCGAATTGCTTGACACGTCTCAGGTGCCCGGCAACTGTATCAAACCTGAACATCTAGACGACTCCACGCATGTTGTGATGACAAGTGCCTCATCAACATCTACAACCACCACTCTACCTCCTCCGCCCGCCCCTCCTCCACCACCTCCCCCTCCACCACCTGCTCACCCCGCCGACGATTTGGACTCTGAAGACTACGATGCTGAAAACGAAACGGCGCGCGCTGCTTCGCGCAAGTCGTTGCCGCACAAGAAACGTTTTCCGCGCAAGCCGAAGGCGCCTCCCGCTGCGCGTAGCAGTGCGCAGAAGACCTACAAATGCAACAAGTGCGGGGAGAGTTTTAGCACACAACCCCTGTTTGCTGCGCATAAACTAGTGCACGCCACACCCAACGCTAAGCGGCCCGCGAGTTTCAATTGTGAACTATGTCAGAAGCAGTTTGGAACGCAGTTGAAGTTTTTCGAACACTTGAAACAGCATTATGAACCGCCGCCGGGAGGGAGTGGGGGGGATGTGCAGTCACAAAACGAACAGGACGTGGATATGGTTGTGGAGCAGAGTGGGGGTGCGGGCATGGAGAACAGGGTGCAACAGATGGGGGGGCATGTTGTGTCGAATGTGCAGGAAGCGATGGGGGCAGTGAAGGGCGATGCTGTAGCAGAACAGCAAAACGCGGTGAAAGTGGAAGCAGCGGTGACGTCGACCGGCCTGACATGTACGCACTGCGGCAAGGTTTTCAAACGCCAGAAGGCGCTGGAGACGCACATGAGCGTGGCCCATCCCAGCCAGGAGGAGATTGAGGAGTTTAGCGAACCCGAGGACATGATGGAGGGCATACGGCATGTGGTCAACATTCCCACCGTGGATAGCGGTGATGAGGAGCATATGGAAGAGAAGATGAGGTGGAGGTACCAGCTGAACGCAGCCTCCAACTACAGTTCAATTCAAGACATGGGCGCTATGGAACTGCAGGACATACAAACGTTGGAGGCAGCCCAGCCCTTGCCGCCGGCACCCACTCCAGGGGAGGGGGCTGAGGGGGCCAATGTTGCCCCCAAAGGGGCAAAGGTGGCAGGAGGAGGAGGAGGAGGAGCAGAGGAGGGAGAAGAGGGAGAGAAGAGATCGCCGTTGATGTGTTTGGAGTGCAATCGTGTCTTTAACCATCGCAACTCGTTGCTCTATCATCTGCGATCGCATTCTGGACTCAGGCCCCATCAGTGTGAAGTGTGTGGGAAGGGGTTCATATCGGGTAGTGCGCTTAAGGTGCACATGCGACTGCACTCTGGCGACAAGCCCTACAAATGCGAACACTGCAGCCGACATTTTCGACAGTGGGGTGACCTGAAGTATCACGTGACATCGCTGCACTCCGACCAGAAACAGTTTCAGTGCGAGTACTGTGGCAAGGACTTTGCTCGCAAGTACTCCCTCAACGTGCACCGGCGCATTCATACCGGCGAGAAAAACTACAAGTGCGAGTTTTGCGGCAAGACGTTCCGCGCTTCGTCCTACTTGAAGAATCATACGCGGATTCATACAGGTGAGAAACCACACTGCTGCGACCTGTGCGGCAAACCATTCCGGGTGCGGTCAGACATGAAGCGGCACCGACGCACACACACCAAAGACGCATTCAACATCCTGACGCATCATCCATCACCCGAGGAAGATGAGGTGGTTGACGAGATGGAAGACCAGGCTACCAGGTTGCACCAGGCACATCACCTGGTAGACAGCAAAGAGGTTGAACTAATTGAAGAACATGCTACCAGGCTGCACCAGGCACATCACCTGGTAGAAAGCAAGGAGGTTGACATGATTGAAGAGCACGCTACCAGGCTGCACCAGGCTCATCACCTGGTAGAAAGCAAGGAGGTTGACATGATTGAAGAGCACGCTACCAGGCTGCACCAGGAAACACACCAGGCGACGCATCACCTGGTAGAAGGCGAGGATGAGAGTTCGGAAACTATTCTGCCCGATAATGCGCCACACACTCCGCTCAACCTCAATATCAGACAGGGCGATGGAGATGAGTTGGTCTATACCACAACAGCGGGCACTAGAACGGCGCATTCGGTTGATAGCAGGGATGGCACTCTGTATGTATGGATACCAGCTGCACCTGATAGTATATTGTCGGATGAATAG
Protein Sequence
MMETVEVTDHRNGGQDLLTNVPVQIVSTEGGRVEVISKMTPVTVNAIMPNQDIMTAQYINLHRMPAEHLNKVIVTDPISGELIAHHVDLSGSDFGHHTVTAQYYDTEELLAHGLTEDERRLAAELVAAQLKQHQGATILTTQDLLNAKTLTSLGTVSIDKSNLSAAIVTGYIQTLDDVQQQQIMQQQDNQERCIMKIYPTQPGQQELQVLNRTSTQPLPPLKKVLSSQSMMVRNKFSESPGIMVELQNSELLDTSQVPGNCIKPEHLDDSTHVVMTSASSTSTTTTLPPPPAPPPPPPPPPPAHPADDLDSEDYDAENETARAASRKSLPHKKRFPRKPKAPPAARSSAQKTYKCNKCGESFSTQPLFAAHKLVHATPNAKRPASFNCELCQKQFGTQLKFFEHLKQHYEPPPGGSGGDVQSQNEQDVDMVVEQSGGAGMENRVQQMGGHVVSNVQEAMGAVKGDAVAEQQNAVKVEAAVTSTGLTCTHCGKVFKRQKALETHMSVAHPSQEEIEEFSEPEDMMEGIRHVVNIPTVDSGDEEHMEEKMRWRYQLNAASNYSSIQDMGAMELQDIQTLEAAQPLPPAPTPGEGAEGANVAPKGAKVAGGGGGGAEEGEEGEKRSPLMCLECNRVFNHRNSLLYHLRSHSGLRPHQCEVCGKGFISGSALKVHMRLHSGDKPYKCEHCSRHFRQWGDLKYHVTSLHSDQKQFQCEYCGKDFARKYSLNVHRRIHTGEKNYKCEFCGKTFRASSYLKNHTRIHTGEKPHCCDLCGKPFRVRSDMKRHRRTHTKDAFNILTHHPSPEEDEVVDEMEDQATRLHQAHHLVDSKEVELIEEHATRLHQAHHLVESKEVDMIEEHATRLHQAHHLVESKEVDMIEEHATRLHQETHQATHHLVEGEDESSETILPDNAPHTPLNLNIRQGDGDELVYTTTAGTRTAHSVDSRDGTLYVWIPAAPDSILSDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-