Basic Information

Insect: Laodelphax striatellus
Gene Symbol: -
Assembly: GCA_014465815.1
Location: CM025325.1:1724298-1760555[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.4e-06 0.0004 22.0 1.4 1 23 308 330 308 330 0.98

2 9 3e-08 3.6e-06 28.4 1.7 1 23 336 358 336 358 0.98

3 9 0.0004 0.047 15.5 0.5 1 23 364 386 364 386 0.97

4 9 1.8e-05 0.0021 19.7 1.0 1 23 392 414 392 414 0.97

5 9 2.9e-05 0.0035 19.0 1.7 2 23 499 520 498 520 0.96

6 9 2.1e-08 2.4e-06 28.9 1.7 1 23 526 548 526 548 0.98

7 9 0.00032 0.038 15.8 0.5 1 23 554 576 554 576 0.97

8 9 0.00018 0.021 16.6 0.8 1 23 582 604 582 604 0.99

9 9 0.014 1.7 10.6 2.6 1 23 610 634 610 634 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.4e-06	0.0004	22.0	1.4	1	23	308	330	308	330	0.98
2	9	3e-08	3.6e-06	28.4	1.7	1	23	336	358	336	358	0.98
3	9	0.0004	0.047	15.5	0.5	1	23	364	386	364	386	0.97
4	9	1.8e-05	0.0021	19.7	1.0	1	23	392	414	392	414	0.97
5	9	2.9e-05	0.0035	19.0	1.7	2	23	499	520	498	520	0.96
6	9	2.1e-08	2.4e-06	28.9	1.7	1	23	526	548	526	548	0.98
7	9	0.00032	0.038	15.8	0.5	1	23	554	576	554	576	0.97
8	9	0.00018	0.021	16.6	0.8	1	23	582	604	582	604	0.99
9	9	0.014	1.7	10.6	2.6	1	23	610	634	610	634	0.95

Sequence Information

Coding Sequence: ATGGCGTTCAACTTTCCGGCGTCGGTGGCCGCCTGTCTGGCCGCCGCCCAAGGCTTCAAGGTGCCCCGCCAGCTGGCCATGTACTGCATCGCACAAGATGCCGGCGCCCCTTACATGCTGTACAAGGACAACATGGACCGTGGAGGGGCAGTGGGGGGCGGCATGCCGCCGATGGGCCTCACTAATGGGGGCGGCGGTGTGCCTTGGGGGGGCGGGGCGCCTCCCTCGGACGGCTATCAGCCGGGCAGTCCGACGCTGATTCAGGGGGGCGGAGGGGGGGCGTCGCCGCAGTCGGCGTCTGTCACTGTCACCGTCCAAACCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTCCTGCCGCCTCCTTGCAGTCGCCTGTCGCCGCCACCGCCTATCAGACCCAGTCCACCGAACAGCAGACTATCAATGTCGCCACACAGCAAGTTAACGGCAACGGCGCAGCGGATGACGACACAGTGGGACAGCAACACCCACAACAGACGTCGACACCGCACAGTCCCGCTTTGACGCAGTCCGCCGAGCCGGACCAGTCCGACCGTCCGCCCACAGCCTTCGACACACCCTACTACAGGGGGGCGGCACCAGCCCCGCCTCCACCCCCGCCCCCGCCACACATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGATCCCGGACCTGAGTTTGTCGCCAGTATGCCTGATCTGTTGGCTGCTCAACAGGTTGCCAAGATAAATTCTAAGGGCAACCAACACACCGACCTGCGCCTGTTCAAGTGTGTGACGTGCGGCAAGGACTTCAAACAGAAGTCGACGCTGCTGCAGCACGAGCGCATTCACACGGACTCGCGGCCCTATCCGTGCGCCGAGTGCGGCAAACGCTTTCGCCAACAGTCGCACCTCACACAGCACCTGCGCATACACGCCAACGAGAAGCCGTTCGCCTGCGTCTACTGTGAGCGCACCTTCCGTCAGCGCGCCATTCTCAACCAGCACCTGCGCATACACTCTGGTGAGAAGCCCTTCGCGTGTACTCAGTGCGGCAAGCGCTTCCGCCAGAAAGCCATCCTGAATCAGCACGTCCGAACACACCAAGATGTAAGCCCGCATTTGGTGTACAAGAACGGTCAGCTATGGCCCCAAGACCTGCCTTTCCCCTCCTCCGACAAAGATGGAGTCGTTTACGACCAAAATGGCGAGAATTGCTTCTCACCCGACAATGCCATCCAGTTTCCGGCTTATTTCAAGGATTCTAAAGGCATGTCGCACGGTGTGTTTGGCCAGGGCAAGGTGTTGCCAGACATAATTCAGCACGGCAGGAGCGCCGGCATGCCGCTCTACGTGCGCTGTCCCATCTGCCAGAAGGAGTTCAAGCAGAAGTCGACCCTGTTGCAGCACGGCTGCATTCACATCGAGTCGCGGCCGTATCCGTGCGGCGAGTGCGGCAAGCGATTCAGGCAGCAGTCGCATCTCACGCAGCATCTCAGGATACACACAAACGAGAAGCCGTACGCATGCGTGTACTGCGGTCGCAACTTCAGACAGCGCACCATTCTGAACCAGCACGTGCGCATCCACACGGGCGAGAAGCCGTACCGGTGCGGCCAGTGCGGCAAGGACTTCCGTCAGAAGGCCATCCTCGACCAGCACACGCGCACGCACCAGAGCGATCGGCCCTACTGCTGCCCTATGCCCAACTGTCGTCGGCGGTTCGCCACCGAACACGAGGTGAAACGGCACATTGACAACCACATGAACCCGCACGCAAGCAAACGCCGCGCCCCGGAAGTGAAACACCGCCCCGCCTCTCCACCGCTCTCGCCGATGCAGCCCCTACCCCCACCACCCACCATCAAACCCGAACTCTACTTCCCGCAGTGCTACGTGTCAACGGCCACACCCTCTCCATCCCCCTTCAGCACTCAGCATTCTCCCTCCCCGTTCACCAATCAGCAACAGCACCAGGCCTACTCCTCATCCCCCCACCCTCAGGCCATCACCCCTCCCACCCCCGTACAGCAGCAGGACTTCAAACCGCCCGTTCAGTTGACGGCCGCTGTTGTACAGTGA
Protein Sequence: MAFNFPASVAACLAAAQGFKVPRQLAMYCIAQDAGAPYMLYKDNMDRGGAVGGGMPPMGLTNGGGGVPWGGGAPPSDGYQPGSPTLIQGGGGGASPQSASVTVTVQTNXXXXXXXXXXXXXXXPPAASLQSPVAATAYQTQSTEQQTINVATQQVNGNGAADDDTVGQQHPQQTSTPHSPALTQSAEPDQSDRPPTAFDTPYYRGAAPAPPPPPPPPHMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPGPEFVASMPDLLAAQQVAKINSKGNQHTDLRLFKCVTCGKDFKQKSTLLQHERIHTDSRPYPCAECGKRFRQQSHLTQHLRIHANEKPFACVYCERTFRQRAILNQHLRIHSGEKPFACTQCGKRFRQKAILNQHVRTHQDVSPHLVYKNGQLWPQDLPFPSSDKDGVVYDQNGENCFSPDNAIQFPAYFKDSKGMSHGVFGQGKVLPDIIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCGECGKRFRQQSHLTQHLRIHTNEKPYACVYCGRNFRQRTILNQHVRIHTGEKPYRCGQCGKDFRQKAILDQHTRTHQSDRPYCCPMPNCRRRFATEHEVKRHIDNHMNPHASKRRAPEVKHRPASPPLSPMQPLPPPPTIKPELYFPQCYVSTATPSPSPFSTQHSPSPFTNQQQHQAYSSSPHPQAITPPTPVQQQDFKPPVQLTAAVVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -