Lstr016738.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- lola
- Assembly
- GCA_014465815.1
- Location
- WOVE01037032.1:18629-24899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.1e-05 0.0037 18.9 1.9 1 21 17 37 17 38 0.96 2 12 5.8e-05 0.0069 18.1 4.0 1 23 46 69 46 69 0.95 3 12 0.0015 0.18 13.6 3.2 1 21 79 99 79 100 0.96 4 12 0.00017 0.02 16.6 0.8 1 20 108 127 108 129 0.96 5 12 0.00074 0.088 14.6 0.3 1 21 137 157 137 158 0.93 6 12 0.00053 0.064 15.1 2.3 1 20 166 185 166 187 0.96 7 12 4.8e-06 0.00057 21.5 1.3 1 21 195 215 195 216 0.96 8 12 0.00062 0.074 14.8 2.1 1 23 224 247 224 247 0.97 9 12 4.8e-06 0.00057 21.5 1.3 1 21 257 277 257 278 0.96 10 12 9.3e-05 0.011 17.4 3.7 1 23 286 309 286 309 0.93 11 12 0.00038 0.045 15.5 1.6 1 21 319 339 319 340 0.96 12 12 0.0003 0.036 15.8 3.4 1 23 348 371 348 371 0.92
Sequence Information
- Coding Sequence
- ATGAGTGTGGCATTGACCCTCAATCAATCAGCATCTGCCAATAAGAGATACCAGTGCAACTCGTGTGGGAAGAGTTATAAAGAGAAAAGTAGTTTGTACACACATCAAAAGTATGAGTGTGGCATTGAACCCCAGTTCAAATGTCCGCTGTGTCCATATCGTTGTAAACGGAAAGGCCACCTCAAAACTCATATTGGTGTTAAACATGATCAATCAGCATTTCTCAATAAGAGATACCAGTGTAATTCGTGTTACAAAAGTTATAAAGAAAAAAGAACTTTGAGTAGACATCAAAAGTATGAGTGTGGCATTGAACCCCAGTTCAAATGTTCGATTTGTCCATATCGTTCTAAACAGAAAGGTCACCTTAAAGAGCACATTGATCAATCAGCATTCTCCAATAAGAAATATCTGTGCGTCGTTTGTGGGAAAGGTTATAAAGAGAAGAGTAGTTTGTACACACATCAAAAGTATGAATGTGGCGTTGAACCCCAGTTCAAATGTCCACACTGTTCTTACAAGGCCAAGCAGAAAGGTCACCTTAAAACGCACATTGATCAATCAGCATTTCTCAATACGAAATACCAGTGCGATGCGTGTGGGAAAAGTTATAAACAAAAAAGAAATTTGAACACTCATCAAAAGTATGAATGTGGCATGGAACCCCAGTTCAAATGTCCACACTGTTCTTACCGAGCCAAACTCAAAGGCAACCTCAAATCGCACATTGTGACTAGGCATGATCAATCAGCATTTCTCAATACGAAATACCAGTGCGATGCGTGTGGGAAAAGTTATAAACAAAAAAGAAATTTGAACACTCATCAAAAGTATGAATGTGGCATGGAACCCCAGTTTAAATGTCCACACTGTTCTTACCGAGCCAAACACAAAAGCAACCTGAAAAAGCACGTTGTGATTATACATGATCAATCATCATTTCTCAATAAGAGATACCAGTGTGATTCGTGTGAGAAAAGTTATAAAGAAAAAAGAAGTTTGAATTCACATCAAAAGTATGAATGTGGCATTGAACCTCAATTCCAATGTCCCTATTGTTCTCATCGATCCAAACAGAAAGGCCACCTTAAAGCACACATTGGTCTTAAACATGGCCTAGCATTAACTTTTTAA
- Protein Sequence
- MSVALTLNQSASANKRYQCNSCGKSYKEKSSLYTHQKYECGIEPQFKCPLCPYRCKRKGHLKTHIGVKHDQSAFLNKRYQCNSCYKSYKEKRTLSRHQKYECGIEPQFKCSICPYRSKQKGHLKEHIDQSAFSNKKYLCVVCGKGYKEKSSLYTHQKYECGVEPQFKCPHCSYKAKQKGHLKTHIDQSAFLNTKYQCDACGKSYKQKRNLNTHQKYECGMEPQFKCPHCSYRAKLKGNLKSHIVTRHDQSAFLNTKYQCDACGKSYKQKRNLNTHQKYECGMEPQFKCPHCSYRAKHKSNLKKHVVIIHDQSSFLNKRYQCDSCEKSYKEKRSLNSHQKYECGIEPQFQCPYCSHRSKQKGHLKAHIGLKHGLALTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -