Lstr008547.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025321.1:34541031-34552334[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.7e-05 0.0044 18.7 1.4 1 23 157 179 157 179 0.98 2 12 0.011 1.4 10.9 0.1 1 22 185 206 185 206 0.95 3 12 3.8e-07 4.6e-05 24.9 1.5 1 23 216 238 216 238 0.98 4 12 9.5e-05 0.011 17.4 4.9 1 23 244 267 244 267 0.98 5 12 0.04 4.7 9.2 0.2 1 23 274 296 274 296 0.97 6 12 0.02 2.3 10.1 0.3 1 23 302 324 302 324 0.92 7 12 0.0013 0.15 13.8 5.0 1 23 330 353 330 353 0.96 8 12 1.5e-05 0.0017 20.0 3.4 1 23 363 385 363 385 0.96 9 12 0.0034 0.4 12.5 2.8 3 23 393 413 391 413 0.95 10 12 7.7e-06 0.00092 20.8 4.8 1 23 419 441 419 441 0.97 11 12 1.3e-06 0.00015 23.3 1.0 1 23 447 469 447 469 0.98 12 12 7.9e-05 0.0094 17.7 0.9 1 22 475 496 475 496 0.95
Sequence Information
- Coding Sequence
- ATGGAGATGAATGGCATAGCTGATGAAAACATGATAATCAAAATTGAAAAGGACGATTCGGATTCATCACAAGACTACTTAGCAAAGGAATTCACTATCGTAGAAGATGAAAGTGAGATCAATCAGTCAATCTCCATGAAAATTGAGTTTGATGCATCAAATTTTGATGCAAATGGTACTGATGGATGCTACGGGGGAGAAAGTTATCCAAGCCGTAGTAAGAAAAATGTGAAATGTAAAGTTGAAGATTCAATTGAATCTGATGAAGATCTTGATCCAATCGCATACATTGATGTATCTTTGGGTGGCTCTGAAGAAAATGTGATACTGCATTTTGATGAAGAAGGTGTTGAAGATTTTAATCCAGTAGAAACTGGAAAAAATGGTGCTAATTCATCGAAAAGTAAGCGCAAGAATAAGTTAATAGCAAGAGAGGATTTTGACATCAATATTGAGAACCCCAAAAAATTTGTTTGCAAATTTTGTAATGTACCTTTTAAAGTAAAGCGGGAACTTAACAAACATGTTAAGACTCATGTGGGAGAAAACCCTTATGAGTGTACAGCGTGTGGAGCACAATTTAGTGCGAGAAAAATGTTGAAATTACATATAAAAAGGTGTAAAAATAAGGAACGTAATGGTGAATTCGAGTGTAATGATTGCGGGAAACGTTTTGATACAAAGATGTATTTGAAAAGTCATTTACTTACACACAGTAGTGAAAGGCCACATAAATGCAGTTTGTGTGGAAAGACGTATAAACATGCCTATGGAGTGACTCTGCACATGAGAAAAAAGCATCTGGGTACAGCGAAAATGTACAGCTGTGATGTGTGTGACTACAAAACGGCATATAGAGCGGGAATAGAGGCACATCGCACGAGGCACTCTCAGGACTTCAAGTATCGCTGTGAAATCTGTAACAAGGGCTTTATGGTGGGCACCTGGCTACTCGAGCACAAGAACTTTCACACCGGAGAGAAGCCGTTTGAATGCGACGTCTGTCACAAGCGATTCTTCTACTCGCGCTATCTCAATGCTCACAAGAAACAGTACCATCCACCGCCCGGCCAAACTATCAAGGTGCATGCGTGTGAGACGTGCGGCAAGGTATTCGCCCACCGCAAATCGCTGACAATGCACTTGAAGTCGCACACCGGTGAAAACGTGCATCTGTGCGATATCTGCGGCAAAGGGCTGAGTAATTCTGAACACCTGAAGTTCCACCGACGCATCCACACCGGCGAGAAGCCGCATGTGTGCAAGTACTGCGGCAAGGGCTTCTCGAAAAGCTGCAACCTGACGCAGCATGAGAGGGTTCACACAGGCGACCGGCCCTACAAGTGCACGGTGTGCGGCAAAGGCTTCTCGCAGCGATCGACGCTTGTCATACACAATCGCTATCACACCGGCCAGCGACCCTATGTCTGTCACATCTGCGGCAAGTCGTTCGTCTGTCAGGCCCTGCTCACCGTTCACATCAAGAAGAGTGGCTGCGATCCCACTGACATTGAACAATACTGTCCCGAGTCCGTTGATAGTGATCTGCTCGCTGTCGCGCTCTCCACTGTTACATCGTCCTAG
- Protein Sequence
- MEMNGIADENMIIKIEKDDSDSSQDYLAKEFTIVEDESEINQSISMKIEFDASNFDANGTDGCYGGESYPSRSKKNVKCKVEDSIESDEDLDPIAYIDVSLGGSEENVILHFDEEGVEDFNPVETGKNGANSSKSKRKNKLIAREDFDINIENPKKFVCKFCNVPFKVKRELNKHVKTHVGENPYECTACGAQFSARKMLKLHIKRCKNKERNGEFECNDCGKRFDTKMYLKSHLLTHSSERPHKCSLCGKTYKHAYGVTLHMRKKHLGTAKMYSCDVCDYKTAYRAGIEAHRTRHSQDFKYRCEICNKGFMVGTWLLEHKNFHTGEKPFECDVCHKRFFYSRYLNAHKKQYHPPPGQTIKVHACETCGKVFAHRKSLTMHLKSHTGENVHLCDICGKGLSNSEHLKFHRRIHTGEKPHVCKYCGKGFSKSCNLTQHERVHTGDRPYKCTVCGKGFSQRSTLVIHNRYHTGQRPYVCHICGKSFVCQALLTVHIKKSGCDPTDIEQYCPESVDSDLLAVALSTVTSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -