Lstr009343.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025321.1:42492282-42504361[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.55 66 5.6 0.1 3 17 180 194 178 199 0.74 2 13 0.025 3 9.8 2.4 2 23 205 227 204 227 0.95 3 13 2.7e-07 3.2e-05 25.4 0.3 1 23 233 255 233 255 0.99 4 13 2.6e-06 0.0003 22.4 2.7 1 23 261 283 261 283 0.97 5 13 1.9e-05 0.0023 19.6 0.4 2 20 290 308 289 310 0.93 6 13 2.7e-05 0.0033 19.1 0.2 1 23 317 339 317 339 0.98 7 13 0.0056 0.67 11.8 3.0 2 23 346 368 345 368 0.96 8 13 0.0021 0.25 13.2 0.2 1 23 389 413 389 413 0.96 9 13 0.00077 0.092 14.6 1.1 1 23 425 447 425 447 0.99 10 13 0.022 2.6 10.0 1.5 2 23 454 475 453 475 0.94 11 13 0.00036 0.043 15.6 2.6 1 23 481 503 481 503 0.97 12 13 1.4e-05 0.0017 20.0 0.2 1 23 509 531 509 531 0.98 13 13 0.00053 0.063 15.1 1.7 1 23 537 560 537 560 0.96
Sequence Information
- Coding Sequence
- ATGGCGGTGGATAGTGAAGAGCGTTGTCAGTCAACAAATTGCAAGCCAATCAGTAACGAAGCAAGCTGCTCTGAAGATACACAATTGAATACGGATTATGAAGCGACAGGAAACTTTATTCTAGTGAAATCTGAATACATTTATTCTGACCATGAAGAATTGGATGAACTGAATACAAGTGTAGCCAGCAATGATGCCAATCAATCACTCAAAATCGAACCTGATATTGATTCAGAGAACATCTCGAGTGAACCTGTCAGGATTGGTTCTACTAATGACAAGACGGTAGAATGTGTTGAAGAAGAAGAAGAAAAAGAAGAAGATGTTGATGATCCTGACGAAGAACCTGAGACAAGTGCAGTTGAAACTAGAAAGATCTACTTACCTGATTTTCCAATCAGTAATGAAAATATAACTGAAAACGAAGATCCGGCAATCAGTAGGGAGGATATAAATCATCTAAGCGGTCTGTCGGATCTGAATCTGTTTGGCCAGGCCACCAATGTAAAAGAGTTGTGGATCAATCCGATCCATCTGTGTCCGATCTGTGGAGAGATGATCAAGACTGCTCAACTGCTGACGCATTCAAAGCTGCACAGCGCTGAGAAACTGGAATGCTTCTTGTGTTCGCGTGAATTCAAGTGTAGGTCGAAACTCAAGTGGCATATCAAGGTGATTCACATGGGCACTAAGGAGTATGTGTGTGAGTTTTGTAGTAAGATATTTCCGCGTCAAGGTAATCTTACGGAACATATGAGGATACATAACGGTGATAAAAAGCATAAGTGTACAGTGTGTCCGAAAATGTTCTCAACTAACAGTATGTTGATGAGGCATTCGAAAATACACACTGGGGAACGAGACTGGATCTGTCCCGTTTGTGGGAAAGGCTTCGCGCAGAAGGGCAATCTCATGAAACACAAGTGCTTCCTCTCGGAAACCAAGGACTTTGTGTGTGAATTTTGTAACAAGGCGTTCAAGGGCAAGTATGCACTGGCTGTACATGTGAAAATACATGGGGAGAGAGAAGAGTTGAGTTGTGAGTATTGTCCGAAAACCTGTTTCAATATAACAAAATTGAAAGAGCATTTGAAGAGAATGCACCCGGGGAAGCCAGCGCCTGATGGAACCATCCCCAAAACAAGGCTGCCAGCCGAGAGAAAGTTCAAGTGCGAGTTTTGTGACGAGAAGGCGTACACCAGTAAAGCGGCGCTGGAGTATCACATGAACGGTGTGCACCCTGATCGATTCAACACAACCACTCAACACTTTTTCCAGTGCGAAGTGTGCAGTAAAACGCTGACTGGCCGCCAGTCGTATGATCGACACGTGAGGACGCACAACGCCGAACGAACCTTGCAGTGTCGTCTGTGCGACAAAAAGTTCGCGACGAAAATGTCTCGCTCTACACATGAACAGCTGCACAGCAAAGACAACAAATTCTTCTGCACCAAGTGCAACAAGGGATTTCCAATCAAGATGTACCTGAAGCGGCACGAGAAGACGCATGCCACTGAGCAGTCGTTTCAGTGTGCTACGTGCGGCGAAATGTTTGTGTCCAATTCTCGGCTGCAGATTCATTTGGAAACGCATGCCTCAACGAAAATGTACGACTGTCACATTTGTGATAGTGCTTTTTCGGAGGTGTCGCGGTTGAGAAGACATCTACGCAATAAGCATGGTATCAGAAGAAGAACAACAATTAATTCAGCTACAAGCAATGGTTGA
- Protein Sequence
- MAVDSEERCQSTNCKPISNEASCSEDTQLNTDYEATGNFILVKSEYIYSDHEELDELNTSVASNDANQSLKIEPDIDSENISSEPVRIGSTNDKTVECVEEEEEKEEDVDDPDEEPETSAVETRKIYLPDFPISNENITENEDPAISREDINHLSGLSDLNLFGQATNVKELWINPIHLCPICGEMIKTAQLLTHSKLHSAEKLECFLCSREFKCRSKLKWHIKVIHMGTKEYVCEFCSKIFPRQGNLTEHMRIHNGDKKHKCTVCPKMFSTNSMLMRHSKIHTGERDWICPVCGKGFAQKGNLMKHKCFLSETKDFVCEFCNKAFKGKYALAVHVKIHGEREELSCEYCPKTCFNITKLKEHLKRMHPGKPAPDGTIPKTRLPAERKFKCEFCDEKAYTSKAALEYHMNGVHPDRFNTTTQHFFQCEVCSKTLTGRQSYDRHVRTHNAERTLQCRLCDKKFATKMSRSTHEQLHSKDNKFFCTKCNKGFPIKMYLKRHEKTHATEQSFQCATCGEMFVSNSRLQIHLETHASTKMYDCHICDSAFSEVSRLRRHLRNKHGIRRRTTINSATSNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01354015;
- 90% Identity
- -
- 80% Identity
- -