Lstr035320.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025330.1:10526231-10535388[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0037 0.43 12.4 2.6 1 23 497 522 497 522 0.92 2 27 0.0032 0.38 12.6 1.6 1 23 578 601 578 601 0.95 3 27 0.0028 0.34 12.8 0.9 2 22 611 631 610 631 0.95 4 27 4.3 5.1e+02 2.8 0.5 2 20 640 658 639 660 0.91 5 27 0.39 46 6.1 0.7 1 23 687 710 687 710 0.97 6 27 0.00081 0.097 14.5 0.3 2 23 749 770 748 770 0.95 7 27 0.0019 0.23 13.3 3.4 1 23 776 798 776 798 0.98 8 27 0.011 1.3 10.9 0.5 1 23 806 828 806 828 0.96 9 27 0.0012 0.15 13.9 6.6 1 23 836 858 836 858 0.99 10 27 0.0011 0.13 14.0 0.7 3 23 898 918 897 918 0.97 11 27 0.016 1.9 10.4 0.8 3 20 933 950 931 950 0.94 12 27 0.00062 0.074 14.8 0.1 2 20 985 1003 984 1005 0.95 13 27 0.069 8.2 8.4 0.5 1 21 1022 1042 1022 1043 0.95 14 27 0.024 2.9 9.8 0.6 2 21 1059 1078 1058 1079 0.93 15 27 0.11 14 7.7 1.1 2 22 1100 1120 1099 1120 0.95 16 27 0.0057 0.67 11.8 0.8 2 21 1138 1157 1137 1158 0.94 17 27 0.011 1.3 10.9 0.5 1 22 1173 1194 1173 1194 0.96 18 27 0.32 38 6.3 0.1 5 19 1216 1230 1214 1232 0.93 19 27 1.5 1.8e+02 4.2 3.9 2 21 1262 1281 1261 1282 0.85 20 27 0.058 6.9 8.6 0.5 1 23 1346 1368 1346 1368 0.93 21 27 0.004 0.47 12.3 0.8 2 23 1420 1442 1419 1442 0.89 22 27 7.8e-05 0.0093 17.7 0.8 2 23 1459 1480 1458 1480 0.95 23 27 3.8e-05 0.0045 18.7 1.3 1 23 1526 1548 1526 1548 0.98 24 27 0.013 1.5 10.7 1.8 1 23 1573 1595 1573 1595 0.97 25 27 0.85 1e+02 5.0 1.6 2 23 1629 1649 1628 1649 0.95 26 27 0.0022 0.27 13.1 0.1 2 23 1681 1703 1680 1703 0.96 27 27 1.2 1.5e+02 4.5 0.4 1 21 1736 1756 1736 1760 0.90
Sequence Information
- Coding Sequence
- ATGTTCTCAGTTGATCGAAACGATGAACTGCCCAAGAAGATCTGCGTCGGATGTGTGCATCAGGTCGACTCGTGGCACAAGTTCAAAACCGCCTGTGACACTGCCCAGACTAAACTCAGCTCCTGGATCAAGACTACTGAACGCTACAAGTCAGCAACCAGTGAGATAATAATCAAACAAGAGCCGATCGATGACGCGGATGATGACGTCATAATTTGCTGCGATGACTCCGATGACAACGACGCTGTCTACGATGCGGCGCCTCCTTCGCCAAACTACGAGAGTGAGAGGAGTGCACCCGAAGCCCCCCCATCCAACGCCTTCTTGATCGAGAATGAAAATCGTCACGAAGACAACAACACCACTTTAGAAGACGTAACCTCCTTGTCGGTTGTGGATACAAGTGCAGAGCCTGATGGAAATGTTGAGATGCGGTCTCCCGGTCGGGATAAATCGTTACTGGAACAGGCATTGGAAGGAGAAGCTCCAGTCGCTGAAACAAATGAACCAACAGCATACCTTGATGAAGATGAGTTGATGATGGCAGATTTCAGTGACGAATTAGCACCTGATGTGAAATTACTGAAAGAAGTTGATGTGAAACAAGACGATATTGAACCAGAAAACGAGATAGATGGCCTAGTAGATGAGAACAGTGCGGCCTCTACAGGTTGTCACATCAAAACAGAAGACACCACTAGTTTGTTGCATATGATACAAACCGAAATAAAACGTAGACTAAGTGCTGATTATGATCTGGAACCTGTTAGTTTTGGTGATGAGGATGATTTTGAAGATTATGATGATGGAAATATGATAGTTGATGATGAAGAAACGAACGACGTTGAGGTGGTTGGAAGGGTGACCAGAAGCTCGAGGAAGTTCGACGATGATGACGTCATGTCTAAAGCTGATAACGGAATGCTGATCGAGGCTTTTTCGTTGAAGGGTGATAGTGGGAAGAGGTATGATCCGTTCAATGATGAACATGAACGGTTGTTGAATGGGGATGCAGCTGACTCTTCCAATGTGGATCCTGATACGATGACCGTTTACAGCAGTGTCACACAGTCGGATGCTACTTCCATGATTGTCAAGCAAGAGCCAATGAGTGACGAAGCTGATAACGACTACGAGCCTTCACCAGTGACAAAGGAGCAGATCGACTGTTCCGCAGACCAACCAATCACAGACGTCGACGTCAAACCGAACATCGGCGAACTGAACCGCAAAGGAAAACCGAAAAGGAAGTACCGCAGACGCTTCTTCAAGACGGGCAGGATTCCTTGTGAGCCTTGCGGCTACACCTACCCGAATTATCTCAAGTTTATGCGACACTGTAAGTCTCTGAAACACAAGAACAACGTGAGGATCTATGAAGGATCGGGAAAATCCGTACCCAGAGAACCCATTCCTGAAAAGATCATCCCTCCAACATTGGACTACGTCAAACCTCCCTCAGTTTCGGTACACAATGGAGTAGAATACCATATATGTCCTATTATGAGTTGTAGTAAATCGTTTAAATATAGAAGAAACCTACAAACTCATGTTAAACAGTATCATGGCTTCAATTTGAAGGAATTGGAGAGGTCTGAGAGACGACCAGAACCTATAGATGAAACGTGCACACCTCCCGAACCACCACCACCTCCTCCTCAGGAACAACCCAGGTTAGAATCCGAGAAACTTGAAGCTGAACTTATTAACAACGGTGAGAAAACAACTGTCTTCTCGTGTAATGTTTGTTCAAAAGAGTTTGGCTACCGACGTTCGTTAAACCAACATCTATTCATCTTTCATAACATCACACCACCTACCCCTCGCCTGAAATGTCCCAGATGTTCGAAAAATTTCCAACGAATGACAGGATTGAAATCTCATATGAGGTCTTGTGGTGTTTTCCTCAATTCGAAACGGTGTCCGTTCTGTTTACAGGTTTTCGACACCTATAAGGAAAATTACAAGCATAAAAGTGTGTGCCCCAAAAGGTATGCTACCAAGGAAACGAGTTGTAAAGCTGCCGCCAGGATTGTGTCTAAACCAGAAAGTGGAATGTATACTTGTAGGTTTTGTGATATTATGTTTGAGGCGCGATCGATTTATACAGATCATATGGAAACCTATCATGCGGGAGAGCCTGTTGATGTTAAGGAGGAGACTATTGTTTCTGAAGATCCCAATGAACACTCAATGGCCGTTGAGAATGAAAGTGTAGCAATCAATGTGAAAAATGGAGAGGTGCCGTGCAAATTCTGTTTCAAATCGTTCCCCACGATTAGTGAGTTGAATAATCATGTACAAGAACACCAGATGAGTAAATCGTTCGAGTGTAAAATTTGTAAACAAGTTTTAACCACGATGAGAAACTTTCACGATCATATGCGTTCGCATTTTGTCACTCATAGTAAGCAGTATTTGTGTTGGACGTGCTATACACCGTTCAATAACCGAAGTGAACTGGGCGCGCATAAGAAGATGCACGAAAATATCACTATGAGAATATACACATGCACGGTTTGCAAGCACTCATTCCATGACTCAGTGTCTTTGCAACGTCATAAGAAGACACATTTCTATGGGTTCGAGCAGAGTGATGCTGCAAGCGACCCTGTCAATTCCAAGCGGACACTGTTGAAATCAATGGAAAGCGATGACAGAGAGTCTGAGAAAAAGGAAACTAGCTTATTGTGTCAAGTGTGCAAGAAGGAGTTTTCCACTCAGGAGGCCCTAGACAAGCATAGTCGTCTACATAAGCCAGTAAACTCCGAAGTCATCAAAAAACTCGTTCAGAATTGTACCACATGTAACAGAAGCTTCAAATCTCGTCTGGAGCTACGTCTTCATCTACCATACTGCAAACCAACTGATGGAGAAACTCAAACCAATGTGCCCATGCCGTCCTTCAAGAAATCCATCTACAACAAAAAGACTCATCCACATCAGAGAGTTCAATGCAACAAGTGCGGTAGTTCGTTCTCTCAAGCTGTGGGATTGAAGAAGCATATTGCATTGAACAGATGTCCCCTGGTGAGACATACTTTTGACAAGGTTAAAAAGACCTTCACGTGTCGCTATTGTAAAAAGAAGCTGTCTACAATTGTCGGATTGTACAAACATCTCAATGCCTGTAAAGTGTTTATCGGCAAGTATGGTAAAAGTTACCATTCGAATCAGTGTCCCACCTGTCATAAACAGTTTTCTTCACTGGGAGTGCTCTACAATCATGCGAGATTTTGTTCCGGATCCAGTACTGCCATTAGTAAACTAATAAAACAAGAGCCTGGAGTTTTCAAGAGTTGTAAAAATTGTCATGAGAAATTTGACACTGATGAATTGTACAATGAGCATATTAAAACTTGTAAATCAGGTTTAGAAAATAGTGGTGAAACAAGTGAAGAGGTTGAAAAGAGTTGCACCTACTGTAATTTGAGTTTCGATGACTTATCAAGTTACAAATTACATCAGAAGTATTGCTCCAAGGGGGAAAGTTCCAGTTCAAGTCCGACAGGCTCATTCAGATGTGAAGGCTGTTCTAGAGTGTTCTTTGCGCAGGATAGATTGAAATCTCACCTGAAAACTTGTAAATTCTACCGTCAAACACCTGTAGTAATGCTTACCAAACAGACAGTGATAGAACAATGCAAGTGTGGAATTGTGTTTACATCTAGATCGGCTCTTGATGCTCATAAGGTGAATTGTGCAAAGGCCAACGATTCTGCTACCACAATCGATATAACTGAAGACAATAATGATTCTGGTACAGCTGCAACGAAAATCTGGAAATGCCAGTACTGTCATAAGAAATTTGACAAGCATTACGTTCATAACAGTCATATGCGTGTTTGTACTGTGAGACGGGGACAAATTGAGAAAAAGTCTCCACAACCGCAACCACATAGACAAGCTAGACAATCGAGACCCTCCCCCTCCCCCTCTTCATCCTCGTCCTCGTCTCTCTCCAATCATCTTCCTCCCCCTCCTCCCATGATACCTCTATCATCACTTTCCTCTTCAATGACGTCATCACCAAATTTCATGTGTTCCTTGTGCAACGCAATGTTCGCCACTGAGAATGATCTAATCATGCATAATTGCGCGCATCGACAACCTCCTGCCCATCCTCCTACTGCCATCAAGTCTGATTCCGTCGAAATCACCGTCGAACCTGATAACCTCCTCAACTTCAGCGATTTCAGTGATTTCGGCTTCCATTACATGGACGACATCTCACAACGAGAATTAACAAGTTCATTGAAGTGTTTGCCTTGTGACAAAGTATTCTCAAGCTCGGTGACCCTAAACAAGCATAGGAGTTTGTTTCATCCGAATGATTCCAATGACATGTATCTGGTGAAGAGTGACGGTACCGTCCAGTGTCCCAAATGTCCCCGATCGTTCAAGGACCAGAAAAGTATGGCACATCACATGGGTTGGCATACAAGGTCCGAGGATTCTTCAGGACAACAATCTATCCCACAACAACCCGTCATCAACCCGAATATTTTCATGCAGTCTGCACCGTCATCATCATCCTCACCTAATGTGCCTCCCTATGTGGAACATAAGACTCCGTTTTCGTGTATGTATTGTAGTAGAGCTTTCACAGGTAAAGGACAGTTGCAGAATCATTTGAAAACTCATACTCAACCGTATCCACAATCTAGTGGTAATCCCATGGAGGGCGATATTCAAAAACCTACAACTACACTAACTTATCGTTGTAGGTTTTGTTCGAAACGCTTCCGAGACAAAGCAGTCATGTTGGAACATCAAAACCTTCATAAAACAATCTTAGCTGCAGCTTCGTCTACGGTTACGTCCACCACCTCAGCTCCACCGAAGCCGAAACCAGCCGTCGAGCCTGTACCTAAGTACCTAGTTTCTTGTAACTTATGTCACAAGATTTTGTCGTCGAGCTCTGTCGCCAAACATAAAAAAATGCATGAAGTGAAAGGCAATGTGCGCTTGAATATATCGACACTTTTTACAGCTATAAACAAGCCGGCCCCAGGACCGGCTCCCGCCCCGAACATGGTGCCTTGTCCGGTGTGCTACCGTCTTTTCAGCGGACAGAGGTCACTGACCGATCACATGTCTACTGAACACGCCGGCTACTCCAAGTTGGACGTGGTCGAGATCGATGATGACGACGACATCTATCGTCCAACTGATCAGAATTTCATGGAGGCTAGTGGTGTATCCTATAAATGCGAAATTTGCAATCTGGCCTGGCAACATAAGAGTGAGTACTTGCAGCATGTCAATGATCCCTCGCATAGGGAACTTACGAAACGGCTGTCGGCCATCTTGAATCGTGTAAATAGCGATATTTCGATTAGTTAA
- Protein Sequence
- MFSVDRNDELPKKICVGCVHQVDSWHKFKTACDTAQTKLSSWIKTTERYKSATSEIIIKQEPIDDADDDVIICCDDSDDNDAVYDAAPPSPNYESERSAPEAPPSNAFLIENENRHEDNNTTLEDVTSLSVVDTSAEPDGNVEMRSPGRDKSLLEQALEGEAPVAETNEPTAYLDEDELMMADFSDELAPDVKLLKEVDVKQDDIEPENEIDGLVDENSAASTGCHIKTEDTTSLLHMIQTEIKRRLSADYDLEPVSFGDEDDFEDYDDGNMIVDDEETNDVEVVGRVTRSSRKFDDDDVMSKADNGMLIEAFSLKGDSGKRYDPFNDEHERLLNGDAADSSNVDPDTMTVYSSVTQSDATSMIVKQEPMSDEADNDYEPSPVTKEQIDCSADQPITDVDVKPNIGELNRKGKPKRKYRRRFFKTGRIPCEPCGYTYPNYLKFMRHCKSLKHKNNVRIYEGSGKSVPREPIPEKIIPPTLDYVKPPSVSVHNGVEYHICPIMSCSKSFKYRRNLQTHVKQYHGFNLKELERSERRPEPIDETCTPPEPPPPPPQEQPRLESEKLEAELINNGEKTTVFSCNVCSKEFGYRRSLNQHLFIFHNITPPTPRLKCPRCSKNFQRMTGLKSHMRSCGVFLNSKRCPFCLQVFDTYKENYKHKSVCPKRYATKETSCKAAARIVSKPESGMYTCRFCDIMFEARSIYTDHMETYHAGEPVDVKEETIVSEDPNEHSMAVENESVAINVKNGEVPCKFCFKSFPTISELNNHVQEHQMSKSFECKICKQVLTTMRNFHDHMRSHFVTHSKQYLCWTCYTPFNNRSELGAHKKMHENITMRIYTCTVCKHSFHDSVSLQRHKKTHFYGFEQSDAASDPVNSKRTLLKSMESDDRESEKKETSLLCQVCKKEFSTQEALDKHSRLHKPVNSEVIKKLVQNCTTCNRSFKSRLELRLHLPYCKPTDGETQTNVPMPSFKKSIYNKKTHPHQRVQCNKCGSSFSQAVGLKKHIALNRCPLVRHTFDKVKKTFTCRYCKKKLSTIVGLYKHLNACKVFIGKYGKSYHSNQCPTCHKQFSSLGVLYNHARFCSGSSTAISKLIKQEPGVFKSCKNCHEKFDTDELYNEHIKTCKSGLENSGETSEEVEKSCTYCNLSFDDLSSYKLHQKYCSKGESSSSSPTGSFRCEGCSRVFFAQDRLKSHLKTCKFYRQTPVVMLTKQTVIEQCKCGIVFTSRSALDAHKVNCAKANDSATTIDITEDNNDSGTAATKIWKCQYCHKKFDKHYVHNSHMRVCTVRRGQIEKKSPQPQPHRQARQSRPSPSPSSSSSSSLSNHLPPPPPMIPLSSLSSSMTSSPNFMCSLCNAMFATENDLIMHNCAHRQPPAHPPTAIKSDSVEITVEPDNLLNFSDFSDFGFHYMDDISQRELTSSLKCLPCDKVFSSSVTLNKHRSLFHPNDSNDMYLVKSDGTVQCPKCPRSFKDQKSMAHHMGWHTRSEDSSGQQSIPQQPVINPNIFMQSAPSSSSSPNVPPYVEHKTPFSCMYCSRAFTGKGQLQNHLKTHTQPYPQSSGNPMEGDIQKPTTTLTYRCRFCSKRFRDKAVMLEHQNLHKTILAAASSTVTSTTSAPPKPKPAVEPVPKYLVSCNLCHKILSSSSVAKHKKMHEVKGNVRLNISTLFTAINKPAPGPAPAPNMVPCPVCYRLFSGQRSLTDHMSTEHAGYSKLDVVEIDDDDDIYRPTDQNFMEASGVSYKCEICNLAWQHKSEYLQHVNDPSHRELTKRLSAILNRVNSDISIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -