Lstr038442.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Laodelphax striatellus
Gene Symbol
-
Assembly
GCA_014465815.1
Location
WOVE01030716.1:140001-157904[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 5.3 6.3e+02 2.5 0.7 2 15 67 80 66 83 0.68
2 13 0.016 1.9 10.4 0.1 1 23 307 329 307 329 0.97
3 13 1.1e-05 0.0013 20.4 1.5 1 23 337 359 337 359 0.99
4 13 0.0089 1.1 11.2 0.4 2 23 367 388 366 388 0.97
5 13 7.5e-06 0.0009 20.9 1.2 1 23 394 416 394 416 0.99
6 13 0.00074 0.088 14.6 1.0 1 23 423 447 423 447 0.97
7 13 0.0001 0.012 17.3 2.2 1 23 453 475 453 475 0.91
8 13 4.5e-05 0.0054 18.4 0.2 1 23 481 503 481 503 0.98
9 13 1.2e-06 0.00014 23.4 1.2 1 23 509 532 509 532 0.96
10 13 8.2e-05 0.0098 17.6 0.6 1 23 538 561 538 561 0.95
11 13 0.00012 0.015 17.1 3.9 1 23 567 589 567 589 0.99
12 13 1.3e-05 0.0016 20.1 0.5 1 23 595 617 595 617 0.97
13 13 0.00049 0.058 15.2 0.1 1 23 623 647 623 647 0.94

Sequence Information

Coding Sequence
ATGACTGCAGATACGGAGAAGAGTTCTCCCACCAAAGGTACGGTTTGCTTCATCTGCAATGCCAGCGTGAATGTGTCCACACGCAACTCGTGTCAGATATTCCATCAGACGGTGAATGCTTCGAATCGGCCGTTGTCTGAGATAATCGGTACAGTGCTCGGCGTTGAACTGCAGGAAGATCTCATTCACTCGTCGATTGTCTGCAAAAAGTGTTTCAAGTCTTGCAACGAGGTCGATGAACTGCAGGAGCGTTTGACCGAGCTCAAGATCGAGATCAATGGCAACTACCATCGAACAATCAAAAAATTCGACATCGACGAAGTTCATGACAAACAAGCACCAGCTGAAGAAGAAAAGAATACTGCCCCATCCGCTGAAGAAGTCCCACCCACCCCTGCTCCGAAAAGTCCAGTACAGGCGACCAAGAAGATAATTGTCGCCAAAAAGCAACTATCTCAGACAATTAAAGACGGAAGAGACACAATGAGTCCGGCGCCTCAACCGCAACCCGCCCTTCAGCCGCCGCCCCCTCTCACGCTCATTCCTAGAGTGGTAGACCAGAAAGACGACGAGGAAAATGGGAGCGAAAATCGTCTGAGTGATTCGGATGAAGATCACCTGGGCATTGACGTGGGCGACGAGGATGACAGCGACTCGAATCAGGGCAGCAGCAAGGACGGATCGAAGAAAATCAAATTGGAGCCCGACAGTGATTACTCTGATAAGGCGTCCACTAACAAGGGCACCAAAAAAACTAAAAAGAAAACTCGTGACGAACTGCCTGCCATGATTCCTCAAATGGTTGTAAGCCGTGACGGAGCCGTCTACACGTGCCTGCTGTGTTCGGCCGACGACAAAGTGATGGGCGAAGCGAAAGCGATCATTCAGCACATGAAGGACGTGCACCAGCTGCGCCTGTACATCTGCGACATTTGCGGCCAGGAGTACTTGAAGCGCAACGACCTGATGGCGCATCTCAACGAGCACGTCAACAACGAGGAGGGCGACTTCCAGTGCGAAATATGCAATCGCATCTTCTCGAATCTGCGACTGTTCCGCGTGCATCGGCGCATGCATCTGCCGCAGTCGAAGAACTGGACGTGCGATCAGTGCGGCAAACGTTATTTATCGAGGAACATGTTGGACGAGCACATGAACTCGCACACGGGTGCCCGGCCCTACCAGTGCGGCGTTTGCGGCAAGGATTTCGCGTCCAAGTACACGTTCAGATCGCACGAGAAAACGCACACCGAGCGACCGCGGCCCTACTCCTGTTCGGAGCCGCAGTGCAACAAGACGTTTCTCACGCAGCAGAATCTGCTGCAGCACGAGCGCACTCACTCGGGCATCAAGAACTATTCGTGCGAAGAGTGCGGTAAATGTTTTGGAACGGCCCGTAATTTGGAAGTTCACTGCTTGGTGCACACTGGCTACAAACCATTCATCTGCAGACTGTGTGGCAAGGCGTTCGCCAGAAAAGCTGAAATAAGAGATCACGAGCGAACTCATACCGGAGAAAAGCCTTATCAGTGCGAATTCTGTGGCGCTACATTCAGCCAACGCAGCAACCTGCAGTCGCACAAGCGCGCGACCCACTACGACGACAAGCGGTACAAGTGCATGGACTGCGGCAAGGGCTTCAAGCGACGCCGACTGCTCGACTACCACGTGAAGGCGGCGCACACCGGCGAACGGCCCTACAAGTGCACCACCTGCAGCGCCACCTTCATCTACCCCGAACACTTCAAGAAGCACCGGCGCATACACACCGGCGAGAAGCCCTATCAGTGCGAGGTGTGTGGCAAGGCATTCAACAGTCGCGACAACAGAAATGCCCACCGATTTGTTCACAGCGATAAGAAGCCCTACGAGTGTTTGGTGTGTGGCATGGGATTCATGCGAAAACCTCTACTCTACAACCACATGCAGACACAGGGTCATCTGAACGACACCATTGTGGTGAATCAGCCTCGGCTGACCACTGACGATGACATGATAACCGTTTCTCAAGACTCGGCCATGCAAGAAATGACGTTTGTCACTGACAGTGACGGAAATACAAAACTGGTTCCTGCCGATCAAGTGGTCAGTCTCGGTCCGATTATCAAATCTGAGTTGGACGCTAGTACTGGAGACACGAAGATGTACATAGCTGAACTGAAGGAGCACGTGATCATACAGCAGAGAAAGGATCCGATGGACAAGTCGGCTGTGGGCGAGGAGATCACTGAAGCAGCCGAATACGAGGAGGCTGTCGAACATTTGATCATCGATGGACAGGTGCACTTCACGAACCCGAGCGGCATGGAGTCGTTGGAGGCGGGAGGCGGGGGCGGCGGCGACGTGACGACGGTGGCCGAGATAGCGTCCAGCCTGGACCCCGACCAGCCGCACACGCTGGTGGTGCCAGCCGGCCGCCACCACGCCGAGTTCGGCGAGCACCAGACCACCATGGTGCAGACCGAGGACGGACCTGTGCATCTGGTGCACATACGGCTGCCGGCACAGGGCGCCGACTCCGACGCCAATGCGCAGTGGTACAATATTGTGCAGCAATAG
Protein Sequence
MTADTEKSSPTKGTVCFICNASVNVSTRNSCQIFHQTVNASNRPLSEIIGTVLGVELQEDLIHSSIVCKKCFKSCNEVDELQERLTELKIEINGNYHRTIKKFDIDEVHDKQAPAEEEKNTAPSAEEVPPTPAPKSPVQATKKIIVAKKQLSQTIKDGRDTMSPAPQPQPALQPPPPLTLIPRVVDQKDDEENGSENRLSDSDEDHLGIDVGDEDDSDSNQGSSKDGSKKIKLEPDSDYSDKASTNKGTKKTKKKTRDELPAMIPQMVVSRDGAVYTCLLCSADDKVMGEAKAIIQHMKDVHQLRLYICDICGQEYLKRNDLMAHLNEHVNNEEGDFQCEICNRIFSNLRLFRVHRRMHLPQSKNWTCDQCGKRYLSRNMLDEHMNSHTGARPYQCGVCGKDFASKYTFRSHEKTHTERPRPYSCSEPQCNKTFLTQQNLLQHERTHSGIKNYSCEECGKCFGTARNLEVHCLVHTGYKPFICRLCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCMDCGKGFKRRRLLDYHVKAAHTGERPYKCTTCSATFIYPEHFKKHRRIHTGEKPYQCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYNHMQTQGHLNDTIVVNQPRLTTDDDMITVSQDSAMQEMTFVTDSDGNTKLVPADQVVSLGPIIKSELDASTGDTKMYIAELKEHVIIQQRKDPMDKSAVGEEITEAAEYEEAVEHLIIDGQVHFTNPSGMESLEAGGGGGGDVTTVAEIASSLDPDQPHTLVVPAGRHHAEFGEHQTTMVQTEDGPVHLVHIRLPAQGADSDANAQWYNIVQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01354010;
90% Identity
iTF_01354010;
80% Identity
-