Lstr006618.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Laodelphax striatellus
Gene Symbol
-
Assembly
GCA_014465815.1
Location
CM025334.1:4367032-4369245[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.054 6.4 8.8 0.5 1 23 61 83 61 83 0.97
2 20 0.00054 0.064 15.0 2.1 3 23 100 120 99 120 0.98
3 20 0.00086 0.1 14.4 4.5 1 23 126 148 126 148 0.98
4 20 0.00072 0.085 14.7 6.8 1 23 154 176 154 176 0.98
5 20 0.00029 0.034 15.9 3.0 1 23 182 204 182 204 0.99
6 20 0.0011 0.13 14.1 0.3 1 23 211 233 211 233 0.98
7 20 0.89 1.1e+02 4.9 0.8 1 23 239 263 239 263 0.94
8 20 1 1.2e+02 4.7 1.4 2 23 270 291 269 291 0.89
9 20 0.0036 0.43 12.4 5.2 2 23 404 425 403 425 0.96
10 20 0.0056 0.67 11.8 3.4 2 23 432 453 431 453 0.97
11 20 0.00063 0.075 14.8 5.8 1 23 459 481 459 481 0.99
12 20 9.9e-05 0.012 17.4 1.8 1 23 487 509 487 509 0.98
13 20 0.0016 0.19 13.6 4.6 1 23 515 537 515 537 0.99
14 20 0.12 15 7.6 6.1 1 23 543 565 543 565 0.97
15 20 1.9e-05 0.0022 19.6 1.3 3 23 573 593 571 593 0.98
16 20 0.00014 0.016 16.9 3.3 1 23 599 621 599 621 0.98
17 20 0.0013 0.15 13.9 0.6 2 23 628 649 627 649 0.97
18 20 0.05 5.9 8.8 2.9 2 23 656 677 655 677 0.97
19 20 0.00016 0.019 16.7 1.2 2 23 684 705 683 705 0.97
20 20 0.00025 0.03 16.1 1.2 1 23 711 734 711 734 0.95

Sequence Information

Coding Sequence
ATGGATGTTGATGAGGAAACTGATTCTTCATCTGTAAACAGTGAAGGAGAAGAATTTGAAGTTGAAATAGATCCAACCACCATTTGTCCCACTGACCTACAGGATGATGAACAAATTCTACAAAATGGCGGAGATTACAATCGCACTAACTCCCAAATACAAGATGGAGAACCATCAGTGTTCCAGTGTTCATTTTGTAAGTACTCAGCTGTGGACCGTGAAGAGTTCCTACTGCATGTGAAAGAACACATCAAGATGAAACCAAAAAAGAAACCAGTCTCCAGAAATTTGCGGCATTGTGAAATGTGCGATTACTCCACTGTTAGATTGATTGATCTACAAAAACATAGACGTACACATAAAGGGCTGCAGATGTATGACTGTCACTTTTGTGGGCACAACTGTATATCACAGTCGGCGCTAGAATTACATGTAAGGACCCACACTGGGGAGAAACCTTACAGTTGTCACCTATGTGAATACAAATCAACGCGTAAAAGTCATCTGAAATTGCATCTTAGGAACCACAATGGAGTCAGTGCATACAAATGTTCGTTATGTGAGTTTAGAAGTTCACGGATGAGTTATTTGAAGAACCATCTACGCACACATACCCTTGACAGCACCGTTTTCACATGTAAAATTTGTGGGTTTAAAGCTACGGAAGCAAGCGAGCTAGAAGCTCATCATTCAGTCCACCAAGTAAAGCTAGGTTACAGATGTGATTACTGTGAAGATTACATATGTGCGGAAGTGAAAGATTTGGAGGACCACCAAAGGAAACTGCACTCCGGAGAAGAGGTGCTGACATGTGCAAAATGTGACTACACATGTGTGCAACAGTGTGTGTTGGATGCACATGTTGGGTTGCATGTGGAGTTGGACACAAGTGGGGGAACATGTTTAGGAACAGATTTGATGGAAAGTACAGGTTTGGAAGTTTGTGGAGATCCACCCATAAAATCAGGTTCCACAATTGTGAAATTGGGTAGAGCAGATGTGCAAAATGTTGTAACACATTCAGGGGTGGATCTGAGTTTAGGGACACCTTTAAAATCTAGTTCAGATGTTGATGGAACTCATCTAAAGCTAGATTCCAATGTTGGTATGGCTTCAGATGGTGCTCTAGATGTGAATGTGAATACCCCTTTAGTGTCATCAGTTACATGTGGTGAAGAATCAGACTCCAAAGCAACTACCGCTAGTTTGAGTTGTGAATTGTGCCACTTCACTTGTACCACCAAAGTGCAATTGCAGACTCATCTTTCCACACATTCTGAAGAAGAACAATTGAAGTGCGAGTTCTGTGATTATTCCACGTTTGAGAAGAACCATTTGAAAAATCATCTACTCACGCACACTGGGGACAAACCGTACAGCTGTAGTTTCTGCAACTATAAGTGCACAATTTCTTCAACGTTGAAGCGACATTTAAGGACACATACTTTGGAGAAACCGTACATTTGTGAGTACTGTGATTATAGAAGTACAAGATTTGAACAAGTGCGTACGCATATGAGAACACATACCGGGGAAAAACCTTTCAAATGTGAGTTTTGTGAACATAGGTGTGGGGACAAGTCAGGGTTACGCAGTCATATGTTGACGCACCAAGATGAGAAACGGTATTGTTGTGAGTTTTGTGATTATAAAACATTGCAAAAGCCACATCTCACAACACACTTGCGTACACACACGGGTGAAAAACCGTACGGTTGTGATTTGTGCAGTTTACGTTTCACAACATCTTCGTCTTTAAAGCGGCATGTCAAGACACACACCCGTGATCGTCCATTTGTGTGTGACTTTTGTGGACATAAATGTGCAAGACAGGAGCAGTTGGAAGTGCACCGTCGTATGCATACCGGTGAAAAACCCTGGGTGTGCAAATTTTGTGATTATAAAACTAATGACCCCCGAGCGTTAAAAGTGCACACAAAACGACACACCAATGAAACCCCTTTAACGTGTGACTTTTGCGAGTATACAACTTTTGAACGGAACCATTTGAGGGTGCATGTTAGGAAACATACCGGGGAAAAACCCTGGAGTTGTGATTTGTGTGATTACAAGTGCTCAACAGGGTATGGATTGACAAGGCATATGAGGATACATACTGGCGAGAAGCCTTATGAATGTAAGTTGTGTGATTATAGGAGTTCTAATGCGTCTGGGTTTAGGAAGCATATGGATAATAAGCATAAGAGGGAGTGA
Protein Sequence
MDVDEETDSSSVNSEGEEFEVEIDPTTICPTDLQDDEQILQNGGDYNRTNSQIQDGEPSVFQCSFCKYSAVDREEFLLHVKEHIKMKPKKKPVSRNLRHCEMCDYSTVRLIDLQKHRRTHKGLQMYDCHFCGHNCISQSALELHVRTHTGEKPYSCHLCEYKSTRKSHLKLHLRNHNGVSAYKCSLCEFRSSRMSYLKNHLRTHTLDSTVFTCKICGFKATEASELEAHHSVHQVKLGYRCDYCEDYICAEVKDLEDHQRKLHSGEEVLTCAKCDYTCVQQCVLDAHVGLHVELDTSGGTCLGTDLMESTGLEVCGDPPIKSGSTIVKLGRADVQNVVTHSGVDLSLGTPLKSSSDVDGTHLKLDSNVGMASDGALDVNVNTPLVSSVTCGEESDSKATTASLSCELCHFTCTTKVQLQTHLSTHSEEEQLKCEFCDYSTFEKNHLKNHLLTHTGDKPYSCSFCNYKCTISSTLKRHLRTHTLEKPYICEYCDYRSTRFEQVRTHMRTHTGEKPFKCEFCEHRCGDKSGLRSHMLTHQDEKRYCCEFCDYKTLQKPHLTTHLRTHTGEKPYGCDLCSLRFTTSSSLKRHVKTHTRDRPFVCDFCGHKCARQEQLEVHRRMHTGEKPWVCKFCDYKTNDPRALKVHTKRHTNETPLTCDFCEYTTFERNHLRVHVRKHTGEKPWSCDLCDYKCSTGYGLTRHMRIHTGEKPYECKLCDYRSSNASGFRKHMDNKHKRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-