Lstr012568.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025335.1:6920109-6930745[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0019 0.23 13.3 1.3 2 23 286 307 285 307 0.95 2 11 6.7 7.9e+02 2.2 0.1 1 13 347 359 347 361 0.82 3 11 7.9e-06 0.00094 20.8 1.3 1 23 377 399 377 399 0.98 4 11 6.1e-07 7.2e-05 24.3 0.9 1 23 405 427 405 427 0.98 5 11 2.3e-06 0.00028 22.5 1.6 1 23 433 455 433 455 0.95 6 11 1.5e-06 0.00018 23.1 0.9 3 23 463 483 462 483 0.98 7 11 2e-07 2.4e-05 25.8 0.6 1 23 489 511 489 511 0.98 8 11 2.1e-06 0.00025 22.6 1.1 1 23 517 539 517 539 0.98 9 11 1.8e-05 0.0022 19.7 1.1 1 23 545 567 545 567 0.98 10 11 1.5e-06 0.00018 23.1 2.8 1 23 573 595 573 595 0.98 11 11 5.4e-06 0.00064 21.3 1.5 1 23 602 624 602 624 0.98
Sequence Information
- Coding Sequence
- ATGATTCCATACATGAACGTTGATTTGAGGTCCATCAATTTACATTACGACCAGAGGATGAATTGGATGCTCAACAATCACCAGAGAATTACTGAGGAACGTCAACAAGAAAAAACAAATCTATCCCAAAAGGAGAAACCCCAGATAAACATGAATCAGCCAATGTCAATGAATGAACTCAACTCAAAGAGCGTTTCTCTAGGCATCCAAACTGATTCTGATTTGGTGCAAAGCTATGACAGAAGCTGCAAGGGACAAGAAGAAGCTAGTGGTCTATTTGTTGGGCAAGCCCAGTGCCAAGCCAAGGAAGAGGAGGCTAGTGCTGCGGCCGCGGCTGCGATCAGATCTTTGAGACAAGCTAGCTCCAATTGCATGCCCATGCCAACTGACTATGAAAGAAACTTGATTGCACGTTTGCCAATAGATGAAAACCATCTAGGCGTAGCTCAATTGAGCCATCCTCATCATCATCATCAGCTGTTGCCGAAAAGTGAGCCACCGCCGCCTTATTATGGAGAAACAGACTTTGACACAAACTACTACAGCAAGCTCATGAGTGCCTTCTTGATACAGGACTGTAATCAACTACGCACGTTCAGGGATCAGGCTGTGCAAGGAGGTGCAAATGCTGTGCTGCCAAACGACCCTCACCCTCACGAGACAGTGGCAGATGGCAACAGCAAGGCGAGTGGTTTTGATGTTCGAAATGCTGCTTACCCTCTTTACAACGATGCTGCTAGTTTATTCTGTCAGCATTCTGGCGTAGTTCCTGGAGAAGGAGGCAAGCGTGCAAGTGAAGGGCATACTGTCAACAGAAAGGGGAACGCGATAGTGCGGCTAGGCGGCGAGGAGGTGACGTGCTCGGTGTGTGACAAGAAGTTTCCACACATGTGGCTGCTGAAGATCCACTCTAGCAAGCACACGGGTCGCCGTCTGCGCACCTGTCCTCTGTGCAGCAACGCGTTCGTCGCTGCGTTCGGCGGCAGTAGACGCCCCCCCGCCACTCGGCCCTCCTCAACCACCCCCTCCCCTACCCCTCATCACTGTGATCTGTGCAATCGGCTGTTCACGCCAAACGATGATGATGACGACCTGCATGATGATTTACATTCCTATGGTGGTAAAGTGTATACGTGCGACGTTTGCAATCGCTCCTACTCCACTCTGGGCAATTTGAAACAGCACAAAGAGAAACACTATGGCGAAAAGAATTTCGTTTGCGAAAAATGTAATAAAAGTTTTTTCACAGCTGGCAATCTGAAGCAGCACTTGATTACGCACACAGGCGAGAAATCGTTTCTTTGCAAGCTTTGTAACAAGACTTACTCAACATCGGGCAACTTGCGTCAACATCTGTTGACTCATACTGGCCAAAAGACAAACTTCTGTGTCATCTGCAACAGATCATTTTCAACTCTTGGAAATTTGAAACAGCACATGTTAACGCACTTTGCTACAAATCTGTATCCTTGTGAGGTGTGTAAGAAAAGCTATTCAACGCTGGGAAATCTCAAGCAACATATGTTGACGCACACTGGACAGAAGATTTTTCCATGCAAAAAATGCGATAAAACGTTCACTACCCTGGGTAATGCGAAACAGCACATGATTCGTCACTCGGGTGAAAAGCCATATGTGTGCCAGACCTGCAGCAAATCGTTCTTCACCCTGGGCAACCTCAAGCAGCACGCTCTCACTCATTCCGAAGAAAAACACTACAAATGCGATAAATGCAACAAATCATTCTACACACTTTCAAATCTCAAGCAACATTCAGCTACTCATTCTGACATCAAGAAAACTTATGTTTGCGAGATATGTAGTAGATCTTTCTCGACGTTCGGCAATTTAAAACAGCACAAACTCAAACACTCGTTGAACATCAGTCAAGTTTCTGCATAA
- Protein Sequence
- MIPYMNVDLRSINLHYDQRMNWMLNNHQRITEERQQEKTNLSQKEKPQINMNQPMSMNELNSKSVSLGIQTDSDLVQSYDRSCKGQEEASGLFVGQAQCQAKEEEASAAAAAAIRSLRQASSNCMPMPTDYERNLIARLPIDENHLGVAQLSHPHHHHQLLPKSEPPPPYYGETDFDTNYYSKLMSAFLIQDCNQLRTFRDQAVQGGANAVLPNDPHPHETVADGNSKASGFDVRNAAYPLYNDAASLFCQHSGVVPGEGGKRASEGHTVNRKGNAIVRLGGEEVTCSVCDKKFPHMWLLKIHSSKHTGRRLRTCPLCSNAFVAAFGGSRRPPATRPSSTTPSPTPHHCDLCNRLFTPNDDDDDLHDDLHSYGGKVYTCDVCNRSYSTLGNLKQHKEKHYGEKNFVCEKCNKSFFTAGNLKQHLITHTGEKSFLCKLCNKTYSTSGNLRQHLLTHTGQKTNFCVICNRSFSTLGNLKQHMLTHFATNLYPCEVCKKSYSTLGNLKQHMLTHTGQKIFPCKKCDKTFTTLGNAKQHMIRHSGEKPYVCQTCSKSFFTLGNLKQHALTHSEEKHYKCDKCNKSFYTLSNLKQHSATHSDIKKTYVCEICSRSFSTFGNLKQHKLKHSLNISQVSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -