Basic Information

Insect: Laodelphax striatellus
Gene Symbol: -
Assembly: GCA_014465815.1
Location: CM025327.1:15642503-15656598[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0011 0.13 14.1 2.1 2 23 224 245 223 245 0.95

2 13 2.4e-05 0.0029 19.3 0.1 1 23 251 273 251 273 0.97

3 13 0.0034 0.4 12.5 0.7 2 23 280 301 279 301 0.94

4 13 8.4e-06 0.001 20.7 1.7 1 23 307 329 307 329 0.94

5 13 5.6e-08 6.6e-06 27.6 1.4 1 23 335 357 335 357 0.98

6 13 7.4e-05 0.0088 17.8 0.1 1 23 363 385 363 385 0.94

7 13 2.8e-05 0.0034 19.1 0.6 1 23 391 413 391 413 0.97

8 13 0.0004 0.048 15.4 5.6 1 23 419 441 419 442 0.93

9 13 7.8e-06 0.00093 20.8 4.0 1 23 516 538 516 538 0.97

10 13 8.3e-05 0.0099 17.6 1.3 1 23 544 566 544 566 0.96

11 13 1e-06 0.00012 23.6 0.7 1 23 572 594 572 594 0.98

12 13 0.00084 0.099 14.4 1.6 1 23 595 617 595 617 0.97

13 13 1.4e-06 0.00017 23.2 0.3 1 23 635 657 635 657 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0011	0.13	14.1	2.1	2	23	224	245	223	245	0.95
2	13	2.4e-05	0.0029	19.3	0.1	1	23	251	273	251	273	0.97
3	13	0.0034	0.4	12.5	0.7	2	23	280	301	279	301	0.94
4	13	8.4e-06	0.001	20.7	1.7	1	23	307	329	307	329	0.94
5	13	5.6e-08	6.6e-06	27.6	1.4	1	23	335	357	335	357	0.98
6	13	7.4e-05	0.0088	17.8	0.1	1	23	363	385	363	385	0.94
7	13	2.8e-05	0.0034	19.1	0.6	1	23	391	413	391	413	0.97
8	13	0.0004	0.048	15.4	5.6	1	23	419	441	419	442	0.93
9	13	7.8e-06	0.00093	20.8	4.0	1	23	516	538	516	538	0.97
10	13	8.3e-05	0.0099	17.6	1.3	1	23	544	566	544	566	0.96
11	13	1e-06	0.00012	23.6	0.7	1	23	572	594	572	594	0.98
12	13	0.00084	0.099	14.4	1.6	1	23	595	617	595	617	0.97
13	13	1.4e-06	0.00017	23.2	0.3	1	23	635	657	635	657	0.98

Sequence Information

Coding Sequence: ATGGCCAACTGTTGGAAGAATTCTGAATTCAATGAAGACAATCTACATGAAATTTGTCGTTTATGTCTGTCTCGGGGTGGCATAATGTCCTCGATCTTCAGTTCTCCAGGAGGCGAGAAATCGTTATCTATAACAGATCGGATAATGTCTTTTACTGCAATGAAGATCTTGAAAGGGGATGGGCTACCTAATCTAATATGTCACAGTTGTTTGTTCAATGTGGAAAGAGTCTATGAATTCAAACAGCAATGTGAGCATTCAGACAATGTACTTAGACAGCATCTTATGTCTGGAAAAAGTTGGGGAACATTTGTGAAAAAAGAGCTTGATTCAAGTGACGAAGAAGAAGAAGAGGCCTCTGAAAGTGGAGAAAATACATCAGCATTATCGAATGGCGTTCATAAAGAAGAGATTGAAGAAGATAGTAAGGTGAAGACAATTTTGAAAGAGGATGAAAACGATTGTTCCAACGATTACAAAACAGATGGGAATGCGACCAGCGCTGAAGCTGCCACCTATCCCAACTCTGAAGATCAGGACGATGAGTTGACGAATTCATCACAGAATAGCTGTACAAGAGATGAAAACATCAATAACAAAGAAGTAGAAAAGCCTGGGGAATCGGACCTAGTATGGTCGGGGGAATTTGATAATAATTCCAACCTGATTCACTGTCCATCTTGTAATAAACCATTCAACAACCAGCAACAGTTTGATCGCCACCAGTTCATTCATACACAGGACGCTCCGTTCCCATGCGACTACTGCGATGCTTCGTTCAACGACCGTGCCGCACTGAAGCTGCACTGGCGCGAGCACGCCGGGCCGCGCACCCTTGTCTGCATGACGTGCGGCGAGACGTTCGCCGACCGCTGCAGCCTCAGCCAGCACGTCACTCTGCATGACGAGGTCAAGCCGTTCCACTGCCCCACCTGCAACAAGGCCTTCACCTATCGCTCCGATCTGCGCAAGCATGCTGTCATACACACCGGAGCCCGACCTTACGTGTGCAAAATCTGCAACAAGTCGTTCACACGCAGCACGAATCTGAACAAGCACGCACGCGCGCACGCCGGCAACCGCCCGTTCGCCTGTGCCAAGTGTCCGAAGATGTTTTCGTCGCGCGCCGATCTCGCCAGACACGCGGTGATCCACACGGGCGAAAAGCCCTACTCTTGTCTCATCTGTGGCCTCGCCTTCAATCGCAAGGACAAGCTGTCGCGACACGAGAAGCTGCACACAGAGGAGCGCGCGCACGCCTGCAGCGAATGCCCCACCAGCTTCCATCGCAAGGAGGAGCTCACCAAGCATATACAGTTCCATCACTTTCGACCGGATCCAGCAATTATGGCTAGTGCAATTATGGATGACACATCACAAGATGTCGATGATATCAAGGTTGAATGCGAAGACGATGAAGCTGAAAATGAAGACGAGACAAATTTGAAACTATCGGAAGGTGAGACGGAGGATATGGTGATCAGCGTGGACCCTTTTCAGGTGGAGGACGCGCCGGGAGGAGCCCGATCCGACGGTCAGCCGCTCTTCTCTTGCGGCATTTGCCATAAACGATTCTCCGACAAGACCTACCTGCGAAAACACCGTCTGATACACTCCGACGAGAAGGCACACACGTGCGGTGTTTGCCAGAAATCGTTTTACCGTAGGCGGGAACTGGTGCGGCACGAAGCGGTTCACACCGGTTTCAAACCGTTCACATGTACGGTTTGCGATAAACCGTTCGCGCGACGCGACAAGCTCGCACGGCACGAGAAAACGCACTACGAGTGCCCGACTTGTCATCAACGCTTCGCACAACTGCACAAACTGGTCGAACACGAGTTGGTGCACAATACCAACATACAAAACGTAACAGTGACGCCAACCTCGTCGCAACGACCGTTCCGGTGCAACCTTTGTCCGGCTGCCTACAACCGCAACGACAATCTCAACAAACACATGCGCGCGCATCGCTCCGAACAGCGAAAATCCCTGATCAAAGCCAACAGCGAGGCGTTGAAAAAGAATCCCGTCGACTATCTCACGCAAATGAACCCCGAGTTGAAAATTACCATCAGGCCGGCCAAATCGTCGAAATCGTCTAGGAAACATTGA
Protein Sequence: MANCWKNSEFNEDNLHEICRLCLSRGGIMSSIFSSPGGEKSLSITDRIMSFTAMKILKGDGLPNLICHSCLFNVERVYEFKQQCEHSDNVLRQHLMSGKSWGTFVKKELDSSDEEEEEASESGENTSALSNGVHKEEIEEDSKVKTILKEDENDCSNDYKTDGNATSAEAATYPNSEDQDDELTNSSQNSCTRDENINNKEVEKPGESDLVWSGEFDNNSNLIHCPSCNKPFNNQQQFDRHQFIHTQDAPFPCDYCDASFNDRAALKLHWREHAGPRTLVCMTCGETFADRCSLSQHVTLHDEVKPFHCPTCNKAFTYRSDLRKHAVIHTGARPYVCKICNKSFTRSTNLNKHARAHAGNRPFACAKCPKMFSSRADLARHAVIHTGEKPYSCLICGLAFNRKDKLSRHEKLHTEERAHACSECPTSFHRKEELTKHIQFHHFRPDPAIMASAIMDDTSQDVDDIKVECEDDEAENEDETNLKLSEGETEDMVISVDPFQVEDAPGGARSDGQPLFSCGICHKRFSDKTYLRKHRLIHSDEKAHTCGVCQKSFYRRRELVRHEAVHTGFKPFTCTVCDKPFARRDKLARHEKTHYECPTCHQRFAQLHKLVEHELVHNTNIQNVTVTPTSSQRPFRCNLCPAAYNRNDNLNKHMRAHRSEQRKSLIKANSEALKKNPVDYLTQMNPELKITIRPAKSSKSSRKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01353999;
90% Identity: -
80% Identity: -