Lstr009307.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Laodelphax striatellus
Gene Symbol
-
Assembly
GCA_014465815.1
Location
CM025321.1:7309016-7320501[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.6e-05 0.0019 19.9 1.1 1 23 258 280 258 280 0.99
2 18 3.4e-07 4e-05 25.1 0.9 1 23 286 308 286 308 0.99
3 18 2.3e-06 0.00028 22.5 0.9 1 23 314 336 314 336 0.99
4 18 0.00075 0.089 14.6 0.6 1 23 342 365 342 365 0.83
5 18 3.4e-07 4e-05 25.1 0.9 1 23 371 393 371 393 0.99
6 18 2.3e-06 0.00028 22.5 0.9 1 23 399 421 399 421 0.99
7 18 1.5e-07 1.7e-05 26.3 2.8 1 23 427 450 427 450 0.96
8 18 0.00064 0.076 14.8 0.1 2 23 457 479 456 479 0.91
9 18 2.8e-05 0.0034 19.1 4.2 1 23 485 507 485 507 0.97
10 18 1.3e-05 0.0016 20.1 3.0 1 21 513 533 513 536 0.95
11 18 2.7e-06 0.00032 22.3 2.4 1 23 542 565 542 565 0.96
12 18 1.8e-05 0.0021 19.7 0.8 1 23 571 593 571 593 0.98
13 18 1.4e-05 0.0017 20.0 4.2 1 21 599 619 599 622 0.95
14 18 1.8e-06 0.00021 22.9 0.4 1 23 628 651 628 651 0.96
15 18 8.4e-07 0.0001 23.9 1.5 1 23 657 679 657 679 0.99
16 18 3.9e-05 0.0047 18.6 2.7 1 21 685 705 685 708 0.94
17 18 9.3e-07 0.00011 23.7 0.1 1 23 714 737 714 737 0.96
18 18 0.16 20 7.2 0.5 1 13 743 755 743 756 0.92

Sequence Information

Coding Sequence
ATGGCTGAAGAAGCAGGACGTTTGTTTGAGAATTACTTTGACAGCGCGCAAAAAGTGGCCAGGAAGAACCTGGAAGACGTTTTGCGTGCTGATTCGACGGGCGTCTATCGGTTCATTCTGAGTGGTGGCAATACTGTCGGGCATAATCCTGGGATACCCAACCCTGGGGGGCACAACAGTGTGGTGCCTAATAATGGAGGGCACAATAGTGGGGGACACAACAGTGGGGGACATAACAGCACAGGACACAGTACTGGGGGGCATAATACAGGACACAGTACTGGGGGACATAATACAGGTCACAGTACTGGGGGACATAATACAGGGCACGGTACAGCCCACAGCAGTGGAGCACATAACAGCACAGGGCATGGCGGTGGGGGACACAATTTGGGGCCTAATAGTGGGGGACCCCACAACAGTGGAGTGCCGGGAGGGGCATCGCAGCTAGTAGACGTGGGCACCAGCACCCCGTCGGCAGGCGTCAACAACAGCCAAGTGCCGACGACGACAGCCGGCTCGACGGGGTCGTCGGGGGCGGGGGCGCACCCGTCCGGTGGCGGTGGTGGAGGCGGCAACCGTCGCGACGACAACCGCGTGATGTACCGCGGTGCCAACCAGGAAGAGGTTGAGGTGGAGGTGGATGTGTGCACCGATGTCTATTCGCAGACGTCGGGTGGCTCCGGCGGACAGCCCAGCTCTCTGGACGGCAGCAAGGAGCCCGTCGGCGGAAAGTGTCCCATCAAGCGCAAGCCCGTCCGCCATGGCGACTATCGCTGCAAAGTCTGCTTCAAATCGTTCTCACAGATGGTGAATTTGGTAACGCACGAGCGTATCCACACCGGCGAGCGTCCATTCCGCTGTGAAATCTGTCTGAAAACGTTCACTCAGCAGCCGAACCTGTGGAAGCACGTGCGCACGCACACGGGCGAACGGCCCTACCGCTGTGAAACGTGCATGAAGGGCTTTACCCAGCAGGCCAATCTCACCAAGCACATTCGCGTGCACACTGGCGAACGGCCCTACTCCTGTCACATCTGCGGCAAGGCATTCTCACAGCAGATGGTGAATTTGGTAACGCACGAGCGTATCCACACCGGCGAGCGTCCATTCCGCTGTGAAATCTGTCTGAAAACGTTCACTCAGCAGCCGAACCTGTGGAAGCACGTGCGCACGCACACGGGCGAACGGCCCTACCGCTGTGAAACGTGCATGAAGGGCTTTACCCAGCAGGCCAATCTCACCAAGCACATTCGCGTGCACACTGGCGAACGGCCCTACTCCTGTCACATCTGCGGCAAGGCATTTTCACAGCAGCAAAACCTGCAGAAACATGTGCGCTTTACGCACAACGGGGAACGGCCCCTGCAGTGCGACACTTGCCAGAAGGGCTTCTCGCAGCAGGTGAATCTGGACATGCACGTGCTGGCTATTCACAAGGGCGAGCGGCCTCACCACTGCAATGTGTGCGATCGCGCCTTCACACAGCCGGTCAATCTGCACAAACACGAGAGGGTGCACACCGGCGAGCGGCCCTATAGCTGCTCGCTCTGCGGCAAAAGCTTTGCTCAGCAGCAAAATCTGCAGAACCATGTGCGCTGCTTTCACAACAAGGAGCGCCGGTTCCGCTGCGACACCTGCCAAAAATGCTTCTCACAGCAGGTGAATCTCGACAAGCACATTCGCGCCATTCACAAGGGCGAACGTCCCTACCATTGTAAGTTTTGCGAGAAAGCGTTTGCTCAGCCGATCAACCTCGAGAACCATGAGCGTGTGCACACCGGCGAGCAACCCTTTGAATGTCACGTGTGCGGCAAACGATTCGCTCAAAAGCAAAACCTGCAGAACCATGTGCGTTGTACGCATTACAAGGAGCGTCGTTTTCGGTGCGAGACTTGCCAGAAGGCGTTCTCGCAACAGGTGAACCTGGACAAGCACATCCGAGCCATCCACAAGGGCGAGCGGCCGTTCACCTGCAAGTTCTGCGATAAAACTTTTGCGCAAAACATCAATCTTGAAAATCACGAACGCACGCACACCGGCGAACAGCCTTTCGCCTGCACCACTTGCGGAAAACGCTTTGCCCAGAAGCAAAACCTGATCAAGCACGTGCGCTGCACGCACAACGGCGAGCGCGCCTACCCTTGCGAGATCTGCGACAAACGCTTCTCGCAACAGGTCAACCTCGACAAACATGTGCGCGCCGTACACAACAAAGAAAGGCCTTTCGAGTGTCTCACTTGCAACAAACGCTTCTCCCAACAGGTAGTTGACGCCCTCCCACATATCAAACGTTGTCCTTTCACCCAAATCCATTGTCCTAACATTCCTACCTATCAAAAATTACAAAATCTCAGCGTTTTTCCAATCGCCCCCTTCTAA
Protein Sequence
MAEEAGRLFENYFDSAQKVARKNLEDVLRADSTGVYRFILSGGNTVGHNPGIPNPGGHNSVVPNNGGHNSGGHNSGGHNSTGHSTGGHNTGHSTGGHNTGHSTGGHNTGHGTAHSSGAHNSTGHGGGGHNLGPNSGGPHNSGVPGGASQLVDVGTSTPSAGVNNSQVPTTTAGSTGSSGAGAHPSGGGGGGGNRRDDNRVMYRGANQEEVEVEVDVCTDVYSQTSGGSGGQPSSLDGSKEPVGGKCPIKRKPVRHGDYRCKVCFKSFSQMVNLVTHERIHTGERPFRCEICLKTFTQQPNLWKHVRTHTGERPYRCETCMKGFTQQANLTKHIRVHTGERPYSCHICGKAFSQQMVNLVTHERIHTGERPFRCEICLKTFTQQPNLWKHVRTHTGERPYRCETCMKGFTQQANLTKHIRVHTGERPYSCHICGKAFSQQQNLQKHVRFTHNGERPLQCDTCQKGFSQQVNLDMHVLAIHKGERPHHCNVCDRAFTQPVNLHKHERVHTGERPYSCSLCGKSFAQQQNLQNHVRCFHNKERRFRCDTCQKCFSQQVNLDKHIRAIHKGERPYHCKFCEKAFAQPINLENHERVHTGEQPFECHVCGKRFAQKQNLQNHVRCTHYKERRFRCETCQKAFSQQVNLDKHIRAIHKGERPFTCKFCDKTFAQNINLENHERTHTGEQPFACTTCGKRFAQKQNLIKHVRCTHNGERAYPCEICDKRFSQQVNLDKHVRAVHNKERPFECLTCNKRFSQQVVDALPHIKRCPFTQIHCPNIPTYQKLQNLSVFPIAPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-