Lstr041532.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Laodelphax striatellus
Gene Symbol
-
Assembly
GCA_014465815.1
Location
CM025325.1:32622031-32633844[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 3.3 4e+02 3.1 1.7 1 14 84 97 84 98 0.93
2 36 0.00059 0.07 14.9 1.6 1 23 104 126 104 126 0.98
3 36 0.0062 0.73 11.7 0.3 1 23 132 154 132 154 0.96
4 36 0.011 1.3 10.9 1.5 1 23 160 182 160 182 0.97
5 36 0.0044 0.53 12.2 1.8 1 23 188 210 188 210 0.97
6 36 0.0018 0.21 13.4 0.2 3 21 218 236 216 237 0.93
7 36 6.3e-07 7.5e-05 24.3 2.0 1 23 254 276 254 276 0.98
8 36 0.0018 0.22 13.4 0.3 3 21 284 302 282 303 0.94
9 36 0.0053 0.63 11.9 0.4 2 21 415 434 415 435 0.94
10 36 0.043 5.1 9.1 3.4 1 20 439 458 439 461 0.93
11 36 1.6 1.9e+02 4.1 1.4 1 21 568 588 568 589 0.91
12 36 8.6e-05 0.01 17.6 0.2 1 21 602 622 602 623 0.95
13 36 0.00046 0.054 15.3 2.2 1 23 629 651 629 652 0.94
14 36 2.3e-05 0.0027 19.4 2.9 1 23 658 680 658 680 0.99
15 36 0.54 65 5.6 7.5 1 23 686 708 686 708 0.97
16 36 1.7 2e+02 4.0 0.8 1 23 714 736 714 736 0.90
17 36 0.036 4.3 9.3 2.1 1 19 742 760 742 761 0.96
18 36 0.0069 0.82 11.6 0.1 1 23 811 833 811 833 0.98
19 36 0.0024 0.28 13.0 1.0 1 23 839 861 839 861 0.98
20 36 0.00011 0.014 17.2 0.4 1 23 882 904 882 904 0.96
21 36 0.013 1.6 10.7 1.7 3 23 985 1005 983 1005 0.96
22 36 2.3e-05 0.0027 19.4 3.7 1 23 1155 1177 1155 1177 0.98
23 36 3.5e-05 0.0041 18.8 0.6 1 23 1183 1205 1183 1205 0.99
24 36 1.1e-05 0.0013 20.3 1.5 1 23 1211 1234 1211 1234 0.98
25 36 7.2 8.5e+02 2.1 5.8 1 23 1507 1529 1507 1529 0.98
26 36 1.2e-05 0.0015 20.2 0.5 1 23 1535 1557 1535 1557 0.98
27 36 5e-05 0.0059 18.3 0.3 1 23 1563 1585 1563 1585 0.98
28 36 0.002 0.24 13.2 0.6 1 23 1591 1613 1591 1613 0.98
29 36 1.9e-05 0.0023 19.6 2.3 1 23 1619 1641 1619 1642 0.96
30 36 1.8 2.2e+02 3.9 3.5 1 23 1694 1716 1694 1716 0.98
31 36 0.39 46 6.0 5.1 1 23 1719 1741 1719 1741 0.98
32 36 2.4e-06 0.00028 22.5 1.2 1 23 1747 1769 1747 1769 0.98
33 36 3.8e-06 0.00045 21.8 0.7 1 23 1775 1797 1775 1797 0.98
34 36 0.0097 1.1 11.1 2.5 1 23 1803 1825 1803 1825 0.96
35 36 1.1e-05 0.0013 20.4 3.2 1 23 1831 1853 1831 1853 0.98
36 36 4.3e-05 0.0051 18.5 4.7 1 23 1859 1883 1859 1883 0.92

Sequence Information

Coding Sequence
ATGTCCAAAGTTAATGTACGCAGAAGTGCAAGGAATCAAGGTGGTAGCTCTAAACAAACTGACAAAGAAAGCAATTTGGAGGACGATAGCTATGATATACTCTATTTTTCAGATGAAAATGCTGCCACTAGTTCATCGGTTAGAAAATCTGGAGACAGGAAAGAAGAGAAGAAACAAACTAAAAGGAAAGAGATTGATTTAAAAGTCGAAGAGGAAGATGGTGTGTTAGATAGGGAGAATATATACGTATATAAGTGTGCAAAATGTGACTACAGTTCATCCACTTCATCGAAACACATTTGTAAGAAATTCAAGTGCGACTTGTGTGAGAGAAGGTTTACTAAAAGAATTAACTTGGCCGGCCATAGAAGATACCATACTGGGGAGAAGCCTTTCAAGTGCGGTATCTGCGGTAAGGCGTTCTACTTGCAAAGTGTACAGGTTAAGCATGAAAGGTTGCACTCCGGTGACAGACCTCACCAATGTCAGGTGTGTCAGAAGACATTTGCTCAGATTGGTAGTTTGCGGTTTCACGAGCGTGTCCACACCGGCTACAAACCGTACGCGTGTTCGGTTTGCGGTAAACGGTTCACCGGCAAAACCAGCCATGACCGCCATATGCAGATTCATACCGGCCAGAGACCGTACGGCTGCGATTTGTGCGGAAAGAAGTTTCCCGAAAAAAATAAATTGACCAAACATCAAGCCACCTGTAAAGGAACAGGTGTGATTGAGGAGACTGTCGAGCCACCCAAACCGTTCGAGTGCGAGTTGTGCGGTAAACGATTCATCAGCAAAGCCAGTCTCAACCGTCATATGCACACACATACCGGCGAGAAACCGTTCGGCTGCGAGTTGTGTGGGAGAAAGTTTGTCGAGAAATACAAGTTGACCAAACATCAAGCTACTTGTAAACAAACTTCCAAGAGCGTAGAAACTCCCGGTGATAAGAGTGTCTCCGAAGAGACTATCGAGATCCCGCAACGGCAAGCTGAATACGATATTAAATCGTTACTGGACGTACTCCAAGACGTCAAGGAAGAAGAGGTTGTCGATCTTGACGCTGTAGAAGACGGACAAGGACAACATGACGACAACATTGGTAAGGTTGCTGAAAAACCATCTAACGTTAGTAAATTGTCCAAAGTAGTTGCTGACAAAACATCTGGTGATAACGTTGGTACTTTGGGTAAGGATGATAACGTTGGTAAGGATAGTACGGTTTCTGACGTTGAATCGAACACTTGCAGGAACTGTGATTACAGTACGACCAATAGAGAAGATTTGGTTAAGCACATGGAAAGGTGTGTGAAATTTGTGTGTAGCAAGTGTCCGAAACGGTTCAAACTAAGAATGCAGTTGGTTAATCATGAGAAATGTCATAATGTAGAGGAGAGATCTAAAGAGAAAGAGAAGATACAAGATGCAGGCAAAGTGGATGATAATGATGATGATTGTATTGAAGCAGACAAAATAGATAATAATGATGATGATTGTATTGAAGCAGACAAAATAGATACTGATGATGATGATTGTATTAATGTATCAACTGAAGCAGTCAATAGTAAGTATATATCAGCTGATGCAGTCAAAGTGGAATACAGTTGTATAAACTGTGATTACGTTTCTTTCAATAGAGAGGATGTAGTTGAACACGAGAAAATGTGTAAAAAAATCGAATTCATGGTCGATGAGCTTGAATTTAAATGCAAAAAATGTGATTTCAGATCATACAAAAAAGAGGATATAGCTGAACACAAGCGAAATTATAATTGTAGAGTGATAGTGACCGACAACCAAGAATACATTTGTGGAGATTGTGATTACACGTTCCCCAACAAAGATGAGCTAGTTAAACATAGGAAAAATCAGGTGTGCAAAAAGTTTGCATGTGACTCGTGTCCTAAAAGGTTCAAACGTGCATTGGCACTGAGAAACCATTACAGGCAACACCATACCAGAGAGCGCCCGTTCAAATGTAGCGTGTGTGAGAAGCCTTTCAGCCGACATGATACTTTACGAAATCATGAGCAAACACATACCGCCCTCAAACCATTTGAGTGCACTTTTTGTCACAAGAAATTCTCACAAAGAATATATTGTACTTCTCACGAACGCGTTCATACAGGCGTGAAACCTTACAGCTGTGGGTATTGTGAGATGAAATTCAGTTGGCAAAAGAGTCGCGACAGACATGAAATGATTCACACCGGTTTCAAACCGTATGCGTGCAAGGTTTGTGATAGGAAGTACTCGGATAAACGCTGTCTGGATAAACATGAGCCAACATGTACTGAAAAACCAGTTGAGAAAGAAGTCGAAGATGGAATACAAGTGGAAATCAAAGAAGAAGTTCCAGATGAAACTCTTGATGACTCAATTTTTGAACATAGTTATGATACATCCAACAACGAGACAGTCACAACTACTTTTGAGTGCGCATTATGTATGGAAACGTTCAGCACAAATGAAAAACTGGTTGAACACGTGAGGGTGCACATTGTGGAAAAGCCTTACAAATGTAAAAACTGCGGTGTGTTCTACTCAAAACTAGATGCCTTCAAGGAACATGAGAAGGTGCATGCGAAAGATAGCAACTTGTCTTCTTTACCAGACCATGAAACAACAACGAGCGAGAAACAATTTCAGTGTAAAATTTGTGAGAAGACGTTTGCTGACTCGAACAGTTTAAGCCTTCATGAAACAATTCACTCTAAAGACGTACAAAATAGTAGTGAAAAGAGTGTAGGAACATTGAAAGATTCAGTTGAAGATAACGATAATGGAGAAAAGAAACAAAGTAACAGTATAGTTGATGTTGAGGTAGTTGATGAAACCGATTTCTTTGTTGAGAGTAATGAGATTTTAATTGAAAACAACGATGCTAACACCGTTATCGATGTGAATGATATTGTTCTAGAGGCTGATACGTCTCTTGTCACTGAATTAGCCTGCAAAACATGCGATTTCACAACTGTCGACCAACATCAGTTGATTACTCATGAGAAACGCCATAAACAACCATGTGAAACAAAATCCAACGATGAGAGAATTGGTGGTAGGGAACTGAGTTCAAAAAGAAGTCTAAAATCTAAAGAAAGCCCAGCAAAGGAGAAAGACGATGAAGAGGACGAGAAGGAGGAGGATAGTGAAGAAGAAGAAGAAGAAGATGATGGTGGAGTTAGTGACGAAAGAGATGTCGATTTTGATAGTACTGGAGTTTCTGAGAAAGAAGATGACGAGCTTTTAATAGAACAATCCGACGATGATTGTTTGAGAAAAAGTCCTGGAAAGAGAAATCTCGAAAGTGGGAAACCTGTTGACTGTTCAAGTCCTAATAGAAATGTTTCGAAGCAGAAAAAACAAGCCAGTCCTGAAACTAGTGGCGAGCAAACGTTTAAATGTACGCAGTGCAAGCAAAAGCTGACAAAGTACGATGTAATAAACGGACACGATTGTTCATTTCGTTGTAAAACTTGTGACAAAACGTACATGAGTAAGAGTAAACTGAAGAGACATGAGCGCGTACACTTGGACGTGAAGCCGTACAAGTGCAAATTATGTCTTAAGGAGTTTTCTAGAGCAGATCTGCTCGAACTGCATGAACGAACTCACTCGGGTCTGAAACCGTACCAGTGTAAATTATGCAACAAGTGTTTCAGTATGAAGGGTGGTCTGGTAGCGCATCTGCGAAGTATTCATCGCAAGTTTGAGAATGCCAATGAGTTTTGCATTGTCAACAAAATACCTAAACAAGATCGGACGGTGGCCGAACGCAAAACAGCTGATTGCTCAACAAACAAACGCAATGTGGAGAGTGATGAAGAAACTGTAAATGAAGGAGAAAGGAAAAGGAGAAGAAAAGAAGATGATGAGAGAGGAGAAAAAGAAGGAGGAATGAGTGTTGGGAATAAAGAAACTGTAAATGAAAGAGAAAGGAAAAGGAGAAGAAAAGAAGAAGAACTGAGAGAAGGAAAAGAAGAAGGAATGAGTGTTGGGGAAGAAGTAGAAGAGGAAAGCGAAGTGGAAAAAAGAGATGTTGAAAGGGAAAATAGAGGAAAAGAAAGAGATGAAGAATATGAAAGTGTTGACGAATTATGGAGGGATGGAGATTTTGGTATATCTCGTGAAGAATATAATTATGATGATGACAATGACGATGATTTCGATGTACAAATTTTTGATAAATCAAGAGAAATTGATGATGTCTGTGGTGAAGAATTAGATAAAAAAATTGAAAACAACCCGAGAGTAACCAAACAGAGAGTAAGTGTACTCGAGGAGGCTATTGATGATGATGATGATTCGATTTATTGTGAGACAATAGACTCGCCTCTTATCAAGATTGAAGCTGAATATGATGATGATTGTATGATGATCGAGGACGTTCTTGGCGAAAAATCATCGAAAGAAGCCGAGGATAATGTGATTGCAAAAATGTTATCATCACCCGGCAAAACTGTAATTTTAAAAGATTACAAAATACTTGTAGATCTGTATAAGAACCCGCAATCTATACACAAATGCAGATACTGTGAGTATACGTCGACTATGAAGCATTTGGTAACAGGTCACGAACGCAAACACACCGGCGAGAGGCCTTACGAGTGTGCAACCTGCCAGAAGAGATTCTCGCAAAAAGGTAATCTGTTAATACACGAGAGGATACATCGCGGCGAAAAACCATACAAATGTGAACTTTGCGGAAGGGCGTTCGGTGAGAAAGGTAGATTAAGGAGGCATATGACGGTTCACACGGGAGAGAAACCGTTCACCTGTCAGTTCTGTGCGAAGGCCTTGGCCACCAAGAGGAGTTTGGAGAGGCACGAACGTATTCACACCGGTGCAAAGCCATACAAGTGTGAGTTCTGTTTCGAACCGTTTTCAGACCAAAGTAATCTGATACGTCATAGAGCCCGGCATCACACCGAAAAACCGCCGGAAAGTGACGACGACGAAGGTGTGATGATTGTCAGCTTGCTGAACGGAGAAACCGGCAAAGGAGTTATCACGGCGAGGAAAATTCTAGAAGTCACTCACAGTGACATGTCTGCCAACTGCAACAATCAGCCTCTCTCGTTCAAGTGTAAGTGTTGTAATTTCAGGGCTGCCAATAGAACACTTGTCAACGAGCACATGAGAACACACAGAGTCTACAGTTGCTCGTTTTGCAGTTTGAGGTTCACCGACAAAACTATTTTCAGAAAACATAAGAAGAAGCACACTCAAGAACGACCACACAAGTGTTCAATATGCGGCAAGGCGTTTGCCAGATCTGATGTGTTGAGAACGCACATGAAACTGCATGCAGGAGTTGAGCGCTACGAATGCACCTATTGTGGAAAACAGTTTGCAACTAAATCTGTACTAAACACACACGAGAGGATACACACAGGCGAGAAACCGTACCTTTGCTCCCAGTGTAGCTGTATGTTCGCCGAGAAAACCAGTCTGGTCAGACATGAGAGAACGCACTCTGGTGAGAAACCTTACATGTGCTCACGGTGCACTAAAACGTTCAGCAATCAGACAGAGTTGACCAGACATGAGAGACGACATATGGGTATTAAACCTTACAAATGTCCCAAGTGCGACTATTCGTGTGTGGACAGTTCTAATCTGAAAAGACACAAAAAGAGGTTCAACCATTTTGAGTTTTTTACTGCTGCTGAGGTGTCCAATTAG
Protein Sequence
MSKVNVRRSARNQGGSSKQTDKESNLEDDSYDILYFSDENAATSSSVRKSGDRKEEKKQTKRKEIDLKVEEEDGVLDRENIYVYKCAKCDYSSSTSSKHICKKFKCDLCERRFTKRINLAGHRRYHTGEKPFKCGICGKAFYLQSVQVKHERLHSGDRPHQCQVCQKTFAQIGSLRFHERVHTGYKPYACSVCGKRFTGKTSHDRHMQIHTGQRPYGCDLCGKKFPEKNKLTKHQATCKGTGVIEETVEPPKPFECELCGKRFISKASLNRHMHTHTGEKPFGCELCGRKFVEKYKLTKHQATCKQTSKSVETPGDKSVSEETIEIPQRQAEYDIKSLLDVLQDVKEEEVVDLDAVEDGQGQHDDNIGKVAEKPSNVSKLSKVVADKTSGDNVGTLGKDDNVGKDSTVSDVESNTCRNCDYSTTNREDLVKHMERCVKFVCSKCPKRFKLRMQLVNHEKCHNVEERSKEKEKIQDAGKVDDNDDDCIEADKIDNNDDDCIEADKIDTDDDDCINVSTEAVNSKYISADAVKVEYSCINCDYVSFNREDVVEHEKMCKKIEFMVDELEFKCKKCDFRSYKKEDIAEHKRNYNCRVIVTDNQEYICGDCDYTFPNKDELVKHRKNQVCKKFACDSCPKRFKRALALRNHYRQHHTRERPFKCSVCEKPFSRHDTLRNHEQTHTALKPFECTFCHKKFSQRIYCTSHERVHTGVKPYSCGYCEMKFSWQKSRDRHEMIHTGFKPYACKVCDRKYSDKRCLDKHEPTCTEKPVEKEVEDGIQVEIKEEVPDETLDDSIFEHSYDTSNNETVTTTFECALCMETFSTNEKLVEHVRVHIVEKPYKCKNCGVFYSKLDAFKEHEKVHAKDSNLSSLPDHETTTSEKQFQCKICEKTFADSNSLSLHETIHSKDVQNSSEKSVGTLKDSVEDNDNGEKKQSNSIVDVEVVDETDFFVESNEILIENNDANTVIDVNDIVLEADTSLVTELACKTCDFTTVDQHQLITHEKRHKQPCETKSNDERIGGRELSSKRSLKSKESPAKEKDDEEDEKEEDSEEEEEEDDGGVSDERDVDFDSTGVSEKEDDELLIEQSDDDCLRKSPGKRNLESGKPVDCSSPNRNVSKQKKQASPETSGEQTFKCTQCKQKLTKYDVINGHDCSFRCKTCDKTYMSKSKLKRHERVHLDVKPYKCKLCLKEFSRADLLELHERTHSGLKPYQCKLCNKCFSMKGGLVAHLRSIHRKFENANEFCIVNKIPKQDRTVAERKTADCSTNKRNVESDEETVNEGERKRRRKEDDERGEKEGGMSVGNKETVNERERKRRRKEEELREGKEEGMSVGEEVEEESEVEKRDVERENRGKERDEEYESVDELWRDGDFGISREEYNYDDDNDDDFDVQIFDKSREIDDVCGEELDKKIENNPRVTKQRVSVLEEAIDDDDDSIYCETIDSPLIKIEAEYDDDCMMIEDVLGEKSSKEAEDNVIAKMLSSPGKTVILKDYKILVDLYKNPQSIHKCRYCEYTSTMKHLVTGHERKHTGERPYECATCQKRFSQKGNLLIHERIHRGEKPYKCELCGRAFGEKGRLRRHMTVHTGEKPFTCQFCAKALATKRSLERHERIHTGAKPYKCEFCFEPFSDQSNLIRHRARHHTEKPPESDDDEGVMIVSLLNGETGKGVITARKILEVTHSDMSANCNNQPLSFKCKCCNFRAANRTLVNEHMRTHRVYSCSFCSLRFTDKTIFRKHKKKHTQERPHKCSICGKAFARSDVLRTHMKLHAGVERYECTYCGKQFATKSVLNTHERIHTGEKPYLCSQCSCMFAEKTSLVRHERTHSGEKPYMCSRCTKTFSNQTELTRHERRHMGIKPYKCPKCDYSCVDSSNLKRHKKRFNHFEFFTAAEVSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-