Lstr031355.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Laodelphax striatellus
Gene Symbol
-
Assembly
GCA_014465815.1
Location
WOVE01037554.1:21666-36677[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 1.7e-06 0.0002 22.9 5.5 1 23 132 154 132 154 0.99
2 22 5.8e-06 0.00069 21.2 3.0 1 23 160 182 160 182 0.99
3 22 1.1e-05 0.0013 20.4 4.6 1 23 188 210 188 210 0.98
4 22 0.0036 0.43 12.5 4.0 1 23 216 238 216 238 0.97
5 22 1.5e-07 1.8e-05 26.2 0.3 1 23 244 266 244 266 0.99
6 22 4.8e-05 0.0057 18.4 0.5 1 23 272 295 272 296 0.95
7 22 0.0047 0.56 12.1 1.7 1 23 301 323 301 323 0.98
8 22 8.3e-07 9.8e-05 23.9 1.6 1 23 329 351 329 351 0.99
9 22 2.7e-06 0.00032 22.3 5.8 1 23 357 379 357 379 0.99
10 22 1.6e-07 1.9e-05 26.2 3.2 1 23 385 407 385 407 0.99
11 22 1.8e-05 0.0021 19.7 0.9 1 23 413 436 413 436 0.98
12 22 1.1e-05 0.0014 20.3 0.2 5 23 463 481 462 481 0.97
13 22 1.3e-05 0.0016 20.1 4.2 1 23 487 509 487 509 0.99
14 22 1.3e-05 0.0016 20.1 3.3 1 23 521 543 521 543 0.97
15 22 8.7e-07 0.0001 23.8 2.1 1 23 549 571 549 571 0.98
16 22 3.7e-06 0.00044 21.8 1.2 1 23 577 600 577 600 0.97
17 22 5.6e-08 6.6e-06 27.6 0.6 1 23 614 636 614 636 0.99
18 22 2.5e-06 0.0003 22.4 4.8 1 23 642 664 642 664 0.98
19 22 0.00029 0.035 15.9 6.7 1 23 670 692 670 692 0.99
20 22 0.00043 0.051 15.3 0.6 1 23 698 720 698 720 0.99
21 22 0.0011 0.13 14.1 3.7 1 23 726 749 726 749 0.97
22 22 1e-05 0.0012 20.4 0.0 2 23 765 786 764 786 0.96

Sequence Information

Coding Sequence
ATGATGGACTCAGAAGTTGATATCAAGCATCAAGAAGAAGTGTTCATCAAAGAAGAGATTGTGATTCTGGATGTAGATGAAGATGAAATGAACGGGATTCACATGAATGATGAGTTAGAATACAGACATGAGGAAGAAGATGGCTACAACACAATTTATATCAAAGAAGAGGTGCCTTGTGAGAGCAAAGAGTTGGTCAACACCATTCCAAATGTAATAACAGGAGATCCTTATCAGCTAGATGGAGGACTCAAAATCACCATGAGCAGCCAGCACTTGTTCAGCGATGAAGAATCTGTATCATCCGTCAGTGATAAAGAGGAAGAGACTATTGTGCAATGCAACGCATCATTGCAAGGTGTAGACACAGCATCTATTGCAAATACTGACTCATTTCAATGTCAATTTTGTGACAAATGTTACACAAGAAAGAGTGTTTTAAATAGACATATAAGGACTCACACGGGAGAAAAACCATTCCAATGTGAATTTTGTGACAAATGTTTTGTAACAATGTTTCTTTTGAATGTACATATTAGGACTCATACGGGAGAAAAGCCCTTCCAATGTGAATTATGTAAACGATGTTTTTCGCAAAAGCCCCACTTGAAAGAGCACATTGCGACTCACACTGGAGAGAAGCCATTCCAATGTGAATTTTGTGACAAATGTTTCTTACGAAAGCAGTCCTTCAATATTCACATTGAGAATCACACTGGAGAGAAGCCATACCGATGTAAAATTTGTGACAAATCTTTCATTGATAAGGGTGCTTTGATTAATCATGTTAGATCTCACACTGGAGAGAAGCCATTTGAATGTGACGAATGTGACGGCAAATCATTCATTGATCAGGCTGCTTTGAAAAGGCATGTCAAGTCTCACCATCAAGAGAAGCCATTCCAATGCGAATTTTGTGAGAAACGCTTCTGGAAAAAGACCAGCTTCAATGAGCACATCATGATTCACACGGGCGAGAAACCTTTCCAATGTCATCTTTGTGACAGACGCTTTGTGCAGAAGGGCGCCTTGAATAGCCACATCATGACTCATACAGGAGACAGGCCATTTCAATGTCAAATCTGTGACAAAACTTACTTTCGAAAGCAGCACTTGAATACCCATATGAAGACTCACGCTGAAGAGAAGCCATTCCAATGTGAAATTTGTGACAAAGGTTTTGTGCAAAAGGTCCACTTGAATCACCACATCAGGACTCACACCAGAGAGAAGCCATTCAGATGTGAATTTTGTGACAGATTATTCATTCAAGAGAGCAGCTTGAATAAGCATATTAAAATGCTGCATACTAGAGACGAGAAGCCATGCAAATCTGGGCCCAAGTCGCCCTCCAAAGGTCAAAAAGAAAGGCCATACCAATGGGAAGATTGTGGCAAATCTTTCGAAAATCTGAGTGGTTTTAATAGGCATATCAGGACTCACACTGGAGAGAAGCCATTCCAATGTGAATTTTGTGATAAATGTTTTGCGCAAAAGCCCCACTTAAATGGCCACTTGAATACCCATATGAAGACTCACACTGAAGAGAAAGAGAAGCCTTTTCAATGTGAACTTTGTGACAAATGTTTCACGACAAAGAGGCTGTTAGTTAGACATGGCAAGCTTCACACTGGAGAGAAGCCATTCCGATGTGAAATTTGTGACAAAGGTTTTGTGCAAAAGGTCCACTTGAATCACCACATCATGATTCACACCGGAGAGAAGCCATTCCGATGTGAATTTTGTGACAGATTATTCATTCGAAAGAGCAACTTGAATACCCATATTAAAATACTGCATACTAGAGAGAAGCCATGCAAAGGTCAAAAAGAAAGGCCATACCAATGTGAAGTTTGTGGCAAATCTTTCGAAAATCAGAGTGGTTTTGATAGGCATATCAGGACTCACACTGGAGAGAAGCCATTCCAATGTGAATTTTGTGATAGATGTTTTTCGCAAAAGGGCCACTTAAATGACCATATTAAAATTCATACTGGAGAGAAGATTTATAAATGTGAAATTTGTGACAAACGCTGCTTGCAAAAGAGTTGCTTGACAAAACATATGATGACACACACTAAAAACAAGCCATTCCAATGTGAATATTGCGATGAAGTTTTTTGGAAAAAGACACTCCTCTATAACCACATTGAGACTCATCCTGGAAAGAAGGCATTCAGATGTGAAGTTTGTGAAGGATGCTTCACAACAAAACGTTCATTACTTCACCATATCGAGTCTCAGCATGAATCAGGAGGGTCTCAATGTGTGCCACGTCAATGTGAGCCACTTCAATGTGAAATTTGTGGCAAATCTTTTGTGGGAAAGGGAGCTTTGATTAGGCATGTTTTGTATCACTTCCAAGAGAAGGCCATTCCAATGTGA
Protein Sequence
MMDSEVDIKHQEEVFIKEEIVILDVDEDEMNGIHMNDELEYRHEEEDGYNTIYIKEEVPCESKELVNTIPNVITGDPYQLDGGLKITMSSQHLFSDEESVSSVSDKEEETIVQCNASLQGVDTASIANTDSFQCQFCDKCYTRKSVLNRHIRTHTGEKPFQCEFCDKCFVTMFLLNVHIRTHTGEKPFQCELCKRCFSQKPHLKEHIATHTGEKPFQCEFCDKCFLRKQSFNIHIENHTGEKPYRCKICDKSFIDKGALINHVRSHTGEKPFECDECDGKSFIDQAALKRHVKSHHQEKPFQCEFCEKRFWKKTSFNEHIMIHTGEKPFQCHLCDRRFVQKGALNSHIMTHTGDRPFQCQICDKTYFRKQHLNTHMKTHAEEKPFQCEICDKGFVQKVHLNHHIRTHTREKPFRCEFCDRLFIQESSLNKHIKMLHTRDEKPCKSGPKSPSKGQKERPYQWEDCGKSFENLSGFNRHIRTHTGEKPFQCEFCDKCFAQKPHLNGHLNTHMKTHTEEKEKPFQCELCDKCFTTKRLLVRHGKLHTGEKPFRCEICDKGFVQKVHLNHHIMIHTGEKPFRCEFCDRLFIRKSNLNTHIKILHTREKPCKGQKERPYQCEVCGKSFENQSGFDRHIRTHTGEKPFQCEFCDRCFSQKGHLNDHIKIHTGEKIYKCEICDKRCLQKSCLTKHMMTHTKNKPFQCEYCDEVFWKKTLLYNHIETHPGKKAFRCEVCEGCFTTKRSLLHHIESQHESGGSQCVPRQCEPLQCEICGKSFVGKGALIRHVLYHFQEKAIPM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-