Lstr019878.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025332.1:533305-541657[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.5 1.2e+04 -2.2 0.5 16 37 211 229 205 234 0.66 2 11 0.004 10 7.5 5.4 13 38 236 262 222 268 0.71 3 11 0.31 8e+02 1.5 0.9 18 29 269 280 263 292 0.81 4 11 0.001 2.7 9.4 0.6 18 39 297 315 285 323 0.88 5 11 0.0079 20 6.6 0.2 19 38 326 346 319 347 0.93 6 11 0.027 70 4.9 0.1 19 40 354 372 352 376 0.91 7 11 0.0057 15 7.1 0.3 18 41 381 401 372 402 0.89 8 11 0.066 1.7e+02 3.6 0.2 19 29 410 420 406 432 0.77 9 11 0.0014 3.5 9.1 1.4 17 40 436 456 421 462 0.77 10 11 0.0021 5.4 8.4 4.0 18 43 465 487 458 488 0.92 11 11 2e-05 0.053 14.9 1.3 13 44 489 517 486 517 0.90
Sequence Information
- Coding Sequence
- ATGGATGCAAGAGTCAGTCCAGTCCAATCCAGTCTCATCTTGACAACCTGGGATGGTCATAATCCAGACAACTTCAGGCCAACAGCAGAATCACAAGATCTAGGACAAAGTAGTGGTAGCATGGATTCCTCTGGTGTGTCTAATCATGATCGTGATCAATATTCAGACCACAATTCTCAATATCCATTTGAAATGATAGTGATAAAGTCAGAGGTAGTAGTTGAAGAAGAACAAGATGTGGGAATAATTGAAAGAGGACTGCTAGTGGAAAAAGAAGGGATGGAAGAAGAAACGTTCATGAAAGATGAGAGCATCCCTACTGATTCATCAAACAGGTTCATAATTGAACAGCATATGAAAAAAGAGAATAAGGAAGATATGATTGAAGTAGAATCAGATGGGGCATATAATTCTTCCCCTACAAAGGTGCAAATTCAGGGAATTTCACCTGTTATAGATACTGCAATTAATGTCAATTTTAGAACTGAACACAATTCTATTGCCTTGAATGAACAAGACTTGAGTGCAGAAGGTAATCTAGATCAAAGAAATTCTACTTCAAATAAGTGTCACAATAATTTTCCTGACCAATTATTACTCACTGATAATCAACATGTTCACAGCAGCGAGTCTTATACTTGTAAAAACTGTGATTATAGAACTAATAAGAAATCACATCTTATCCAACACTCACTTAGGCATACTAGAGAAAGACCTTATAGCTGTGAAATTTGTGAGAAAAAATTCACTCATAAATCAACTCTCACCACACACTTATATAGACATACTGGAGAGAGGCCTCACATCTGTGAAATTTGTGAGAAAACATTCATTCATAAATCAGATCTTAACAAACATATACTTACACATACTGGTGAGAGACCTTATAGTTGTGAATTTTGTGATAAATCATTCACTCGGAAATCAAATCTTACCAAACATTTACTTATACATACTGGAGAAAGACCTTACAGTTGTGAAGTTTGTGAAAGAACATTTGCTTACAAACTTTCTCTTACCTCACATTTACTTACACATACTGGAGAGAGGCCTTATAGTTGTGAATTTTGCAATAAATCATTCGCTTGGAGATCAAACCTTGCCACACATCTACAAATACATACTGGTGATGGACCTTACAACTGTGAATTTTGTGATAAAACATTCATTTATCAAATCAATCTTTCTAGACACTTACGTACACATACGGGAGAGAGACCTTACAGTTGTGAATTTTGTGAGAAAACATTCACTCAGAAAGCATATTTTACCGTGCATTTACATACACATACTGGAGAGAAGCCTTACAGCTGTAAATTTTGTGATAAAACATTCGCTCAGAAATCAACTCTTACCTCACATTTACATACACATACTGGAGAAAGGCCTTACAGATGTAAAATTTGTGATAAAACATTCAATGATAGATCCAATCATTCTAGACACTTACGTACATTACATACTGAAGAGAAACGTTACCGATGTGGAATTTGTAATAAATCATTCACTGCCAGTTCTAGTCTCACTAGACATGTAAAAGGAGCACATCCAGGAGATTAA
- Protein Sequence
- MDARVSPVQSSLILTTWDGHNPDNFRPTAESQDLGQSSGSMDSSGVSNHDRDQYSDHNSQYPFEMIVIKSEVVVEEEQDVGIIERGLLVEKEGMEEETFMKDESIPTDSSNRFIIEQHMKKENKEDMIEVESDGAYNSSPTKVQIQGISPVIDTAINVNFRTEHNSIALNEQDLSAEGNLDQRNSTSNKCHNNFPDQLLLTDNQHVHSSESYTCKNCDYRTNKKSHLIQHSLRHTRERPYSCEICEKKFTHKSTLTTHLYRHTGERPHICEICEKTFIHKSDLNKHILTHTGERPYSCEFCDKSFTRKSNLTKHLLIHTGERPYSCEVCERTFAYKLSLTSHLLTHTGERPYSCEFCNKSFAWRSNLATHLQIHTGDGPYNCEFCDKTFIYQINLSRHLRTHTGERPYSCEFCEKTFTQKAYFTVHLHTHTGEKPYSCKFCDKTFAQKSTLTSHLHTHTGERPYRCKICDKTFNDRSNHSRHLRTLHTEEKRYRCGICNKSFTASSSLTRHVKGAHPGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857866;
- 90% Identity
- iTF_00857866;
- 80% Identity
- iTF_00857866;