Lstr023932.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025324.1:29127288-29129249[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.4e-10 3.5e-07 31.5 1.7 1 44 59 101 59 101 0.97 2 8 3.8e-12 9.7e-09 36.4 3.7 1 44 180 222 180 222 0.95 3 8 0.0017 4.3 8.8 0.1 4 28 271 292 268 309 0.83 4 8 0.00021 0.53 11.7 2.9 1 44 346 385 346 385 0.93 5 8 2e-05 0.052 14.9 0.1 11 44 459 492 455 492 0.91 6 8 7.8 2e+04 -3.0 0.0 20 34 499 512 499 512 0.81 7 8 0.079 2e+02 3.4 0.0 4 27 536 557 534 561 0.88 8 8 0.015 37 5.8 0.0 1 20 633 652 633 653 0.92
Sequence Information
- Coding Sequence
- ATGTCATTGAGACGAGTCAGACGCAAAACAAGAGCTGCAAATTCTTCGGCTCACGATGACGCCGACGTCATTGTTGAAAGTTGTCCAAATTCACCTCTGGACGCAGAAAAAGTGGAAGAACAGCATAGGAAGCCCAAAGAACAGCAACAACAGAAATTGGGGAAAAATAGAAAAAGTAAAATTTGGAGCTATTTCAATTTGGTTGTAAACAATAAGTACGAGTGTGTTTTGTGCTCTGGCAAATTGAATCATGTTGGTGATAGCACATCCAATTTTTACAGACACATGCGTAAAAAGCATCCCTCAGTATCTGTTCCATCGCCTAAGAAAAAGGAACAACAGGTGCCTATTCATATTCAGTATGATGATGAAAGTGATCCTCTATATATTAGAGAAAGTTCATCTCGTGGTGTAGCAAGTGTGAAAGAACAAGGAGAAAATTTGGGAGACCAGCAAGACAGTTCAGAAGAACAGCAAGAATGGTCAAAATTACAATCAACGACTGAGCAACAAGAAACGAAATCGAAGAAGAAGAGTAGTAGAGTTTGGAGCTACTTTCAGTTGATATCAAAGAATAAATATCAGTGTACTCTGTGTTCTTATAAATTGAATTTCATTGGTGGCAGCACTTCCAACTTCCACAGACACTTGCGTAGAAATCATTCACTAGATTTGCTTACATCGTGTGAAGACTCGTCCGAGGATAACGTTATAATTGAGTTTGATGAGGAGCGTGGAAATGAAGCCGAAGAAAATGAATGGCCGATGGAAACAAAAGATGATGACACCAGCTACGACGCCAATCAGCCATGGAGATTTTTTGATATTCAAACAGGAAATGCTAAATGTAGGCTCTGTTTTCGATCTCTAATCTATACTTCAATTGCCGATCTAGCTGTTTTGTTGAACCATCGCAAGTCAAAGCATTGTATTTCTTTTCGCAATTATGATTCAGATAATTTTCAGCTCATTGATATTGTTGACAGTGACGAAGGTTGCGATTCAAGTGACAACAACACAGTCTCTCCTTACGGAAGTAAATTTAAAATGTATTACACAAATATTGGAGAACATTCGGCAACTTGTAAAATGTGTTTGAGTTCAGTTTCTTCCAACAGAAAAACACTTATTTCTCATCTGTACAAGGAACATAAAAACTTTTTTTCGAAGAAATATCCCACATTTTGGCATTTTTCAAAGTTTTTCAGTAGTGATTCGTTTAAAACGATATCATCCAAAGAAAATTCCATCTCAAGTAATCAAATTTCTACTGGCTGTAGTAAGGATGACCGATTTCCTACTGAAGAAGAGATGGGCATAGCTGCTCCACCTAAACGCATGTCTTACAGTGATAATATTGTAGGTAACTTCTTGAACCGTGATGCAGCCAAAGCGAAATGCATGTTTTGTTTAAATAGGTTTTCTTTTTCGGGAGATATTAGTATTCTTGAACAGCATATTCTTAATAAGCATAAAACAGATTTCATTCAAAAAATGTTGTGTGAGATGGTGTTCACTGGCACAAATACCAGTGGTAAAGCCACAAACAAACGGTCAATTGACAAATCTCCAAGTGAACAGCGAAATCTGTTGAACAAAGATCTCCTGTCCTATTTTGAACCTCTTGAAAACCTTCACTATAAATGCAAAGTTTGCTCTGAAATAATGAGTTTGGAGGATGATGAAATTTTTGACCCCTTAGCTGTACATGTTTGGTATGCACACATGAGTAAGATATTCAGATCAATTGTGTTTCTCCAGTCATTTGGCATCGCGGGCATAAATCAAGAAGAAAGAAATTCAAATGATGGAAACTCGGCTGCCCTGAGGAACAAAGAAAAGCCTCGTAAAGCCTGGCTTGATTCAATCACATGGGTTAAGCCAGAAGGTAAATTGAGCCAGGCATGGAGGTATTTCTTAACTCCAAGTTCCAAATTACCATATGCAAAATGTCGATTGTAG
- Protein Sequence
- MSLRRVRRKTRAANSSAHDDADVIVESCPNSPLDAEKVEEQHRKPKEQQQQKLGKNRKSKIWSYFNLVVNNKYECVLCSGKLNHVGDSTSNFYRHMRKKHPSVSVPSPKKKEQQVPIHIQYDDESDPLYIRESSSRGVASVKEQGENLGDQQDSSEEQQEWSKLQSTTEQQETKSKKKSSRVWSYFQLISKNKYQCTLCSYKLNFIGGSTSNFHRHLRRNHSLDLLTSCEDSSEDNVIIEFDEERGNEAEENEWPMETKDDDTSYDANQPWRFFDIQTGNAKCRLCFRSLIYTSIADLAVLLNHRKSKHCISFRNYDSDNFQLIDIVDSDEGCDSSDNNTVSPYGSKFKMYYTNIGEHSATCKMCLSSVSSNRKTLISHLYKEHKNFFSKKYPTFWHFSKFFSSDSFKTISSKENSISSNQISTGCSKDDRFPTEEEMGIAAPPKRMSYSDNIVGNFLNRDAAKAKCMFCLNRFSFSGDISILEQHILNKHKTDFIQKMLCEMVFTGTNTSGKATNKRSIDKSPSEQRNLLNKDLLSYFEPLENLHYKCKVCSEIMSLEDDEIFDPLAVHVWYAHMSKIFRSIVFLQSFGIAGINQEERNSNDGNSAALRNKEKPRKAWLDSITWVKPEGKLSQAWRYFLTPSSKLPYAKCRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857834;
- 90% Identity
- iTF_00857834;
- 80% Identity
- -