Lstr004329.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- WOVE01013950.1:47-4342[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.2e-09 3e-06 28.4 0.5 3 43 11 49 9 50 0.96 2 8 5.2e-10 1.3e-06 29.6 1.6 3 43 71 108 69 109 0.92 3 8 2.1e-10 5.4e-07 30.8 0.4 3 44 148 187 146 187 0.96 4 8 8.8e-05 0.23 12.9 1.5 5 44 256 293 254 293 0.96 5 8 8.3e-09 2.1e-05 25.7 0.1 11 44 362 395 355 395 0.91 6 8 6.8e-11 1.7e-07 32.4 0.3 1 43 992 1031 992 1032 0.95 7 8 0.0002 0.51 11.7 1.1 1 43 1071 1117 1071 1118 0.89 8 8 8.1e-09 2.1e-05 25.8 0.3 2 43 1130 1173 1129 1174 0.95
Sequence Information
- Coding Sequence
- ATGACTTCTACTAATAAACGTCATTCGATTGTTTGGCAGCATTTCAAGGAAGTTAGTCCACGATTGGCTCAGTGTCACTTATGCAAGAAAAATGTAGAAAGTTTTGGAAGTACTGGTGCACTCTTGAGACATTTACGGAAGTTTCATGTGGACGTTCTGGGGGAAAATGTCTCGAATCCACAGAAATCAAATAAAAGTCAGCGATCGTTTGTATGGGAATATTTCACTAGAGAAAGTCAGAAATCTTCGATTTGTAATCTGTGTAAGTGGGTTGTAAGGGGTGAGAATACGGGAAATCTGATTCATCATTTGAAACGAAGACATGAGCAAGACTTGGCGGGGAAACCGATAGGCTTGTGGTTGATGAGTGCTGGTGGAGGGAGGAAAAATGAGAAAAAGAAGACTGATAAAAAGAAAAAAGGAGGTAAAAAACCGTCGATTGTTTGGTCGTACTTTATCGAGAAAGATGACGTAACCGCCAGTTGTTTGCTGTGTAAACGCGATATAAAACACTACAAGACAACTAAGAATCTATTGGAGCATTTGAGGCGAATTCATCCTCATACATTGAAACTGAACAAAGATGGCGGCGATGATGATAATGTGACGGCTGGCTCGGAAGTTGGCGAAGAACTGCCGTTCATCGAAACTGTAACTGATGCCGACTTTCAGCCGACGTCTTCTGAAGTGCCTCCACCGAATAGTAGCAGAAAAGTTGTGAGCGAGCCGAGAGGTTCTGGCAATAAGAGTTCTACGTTTATTTCTAAGCATTTCATCAAGTTTCAGGATAATATATATTTGTGCAAAAGTTGTCAGAATACAATTGAGAATGTGAAGAGTTTGAGAAAGTTGTCGGATCATTTGAGGAGTGCGCACAAAGGTATGTTGGACGGGGGCTGTGTGGCGGCGGCCATTGACAATTTGGACGACGTTTCGAATTCCACTTGTGCATCGTCAGCCGTACTCAATTCAGAGTTGAACACGATCTTGGAAACACTGGAGAAAAGCGGCGATAAAAGTGAGGAGCCGATGAGTGGTTTCAAAAAAGAACAACACCAGTCGATTGTTTTGAAGTCGTTTTCGCGTAAAGATGAAACGACCGTTACTTGTTTGTTTTGCGGTGAGGACATTGAACGGTTTTGTGGCATTAATAATCTATTGGATCATTTGGAAAGTAAGCATCCCGATTATCAGTTGATTGATAGTTTGACAATTCCCTTTGCCACTACTTCTGATTCACAACTAGTTGAAATTGATGATAATGGTTTGTTGAAGAATTTGAATACGTTTGATTGCGGTGCAGAGGAAAGTGATCATCAGATGGTATTAAGTAAAGAAGATATGTTTCTCAATAAGAATTTGGATTCGTTCAATGATGGTAATAACCAGCAATTAAGTTTAAGTAAAAGTGATGAATTGTTTGTAGAGAAAAATTTGAATTCTTTCAATTTTAGTACGGAGGCGAGTGATCAACAGTTAGTTTTAAATAAAGATGTGGAAATGTTTGTGGAGAAGAATTTAAAAACTTTCAGTTGCAATGATGAGGAAAGTGGCCAACAGTTGGTTCTAAATAAAGATGATGAAATGTTTGTGGAGAAGAATTTCGATTCGTTCAATTGTAACTCGGAGGCAACTGATCAAAATTTGTGTATAAATGATGAGAGTTTCATGGATAAGGAAACTAGATACATCGTTGCAACCGATGCTGTGTTGAGTGGTAAACAATTGGATATCAGTGAAAAAAGTATGATTTTAATTGAAAAATCTGATGGAACCTTTGATACAAGTGGCAATCAAGTAGGGTTACATGAAAATGCTGAGACATTCATTGAGAATAATCCCAATTCTTTCGGTAAAAATTATGTTATTTCTTGTGGTCAAAAAGTTATTAATGAAAACAGTGAGCTGTTTATGGAGACGTCAAATAATGATGAATTGAGTGGAAATAATGTAGTTTTTAGTGGTAAACAACTTGGAGTTAATGAAAAAAGCGAAATATTTTCAGAGAAGTCAGATAACACTTTCAATACAAGTGATGTTGCTACAAGTGGTAAACAGCTAAGTATCAATGAGAAAGGTGTATTTTTTGAGAGTTTGAGTTGTTCCTTCAATGCAAGTGATGGGGTATTCACTGGTAAAGGATTAGGTGTTGGTAAAAATCATGAGATGTTTGTTGAAAACGCAACTTATCCATTCGAAACAAATCATATAGTTACTGCAAATAAGCAATTGGAGCTCGATGGAAATAATGTTGAGGAAAGTAATCAGTTTGATAAAAATGATGTGGTTATTAGCGGTAAACAGTTGAGAATTGATGAGAATGGTGATCTGTTTGTAGAGAAACCTACTGACTCTTATGAAACAAGTGGTATAATGGGAGTTACCAATTTAGTTGAGAACCAATTGAATAATTTCAACCAGAATGAAACTGTTGGTGAGTCTCATTTAGTAGAAAATCAACTGAATTTCAACGAGAATTTAGTTAACGTAGGTGTTAGTGAGCGGGGTATGGTTGGAAAACAGTTGAGCTTCAACGAGGATAATGGAGAGAATAGCGAGTTGCCCAATATGGATATGGTTGTGGATAGTATTAATCAAATGGATTTGGAGGGTATAGCTGATGATTTTCTAAAAAATGTAGTACCAGGTCGCATTGAAATGTCGGTAATAGGAGATGAAAATCGAGTGGAGAATTCGAGTTTGGTTAATGGTAGCGATGCTGCAGCAGCTTCGTTAACGTTCGAGTACCAAACCAAAGACGATATCAGATCGTTGTGTAGTTTGATTTGTAATTGTGACGTGTGGGGTGGGAAGAGTGGAGATATCGTTAGTCATATGAGAGCGACTCATGGTGTCATACTGAAGCATTCGCCCAAAGAACAGGTGCAGAAGGAAGGAAACGCGAAGCAGAAGAAAAAAGTGAAAGAGAAGAATGATGCAAAGACGGAAAAGAAGAAAGTTTACAAAAAGCGATCGGTGATTTGGAGATATTTTGTTGAGAAAGACGAAAAGACGGCTACTTGCTTGCGGTGTGGTATTGACTTTTCTAGGTCGAGTTCGAGGAATTTGCTGACACATTTGAGGAGGAAACATGCTATTGGCTGTGAAGAAATCTCTTCAGCTTCGAATATTTGCAGAAATTCCACAGTTGTGAAAGCCATTAGTAAAAATTCTGGAAGTGTGAAAAGAGAAAAAAATGTTAAGAAATCATCGGTTGTTTGGAAGTATTTCAAAGAAACCAAGGGGTCGAGCGATAGTTGTGGTTATTTGTGCGTTTTATGCAACGAAGACAGTGGTTGTAACAAGTTTTCGACGGTTTTAAATATGCGTAATCATCTGCGGCAGGTGCACGGCATTATTTTCAAGAAACGGCCGAAACGTTTCTCGTATGTTTGGAAGTATTTTCGGGTGGATGAGGAGGCCGGCGATGATCAGAATTGTACGTGTACATTGTGTGGGAAAGAGTTGAAGAACTATAGTGATGTGAGGGTGTTGAAGAATCATTTGAAAAATAGTCATGCGGATGTGTTCAATGGTGCGAGACAAGAAAAGGATGAAGAAGA
- Protein Sequence
- MTSTNKRHSIVWQHFKEVSPRLAQCHLCKKNVESFGSTGALLRHLRKFHVDVLGENVSNPQKSNKSQRSFVWEYFTRESQKSSICNLCKWVVRGENTGNLIHHLKRRHEQDLAGKPIGLWLMSAGGGRKNEKKKTDKKKKGGKKPSIVWSYFIEKDDVTASCLLCKRDIKHYKTTKNLLEHLRRIHPHTLKLNKDGGDDDNVTAGSEVGEELPFIETVTDADFQPTSSEVPPPNSSRKVVSEPRGSGNKSSTFISKHFIKFQDNIYLCKSCQNTIENVKSLRKLSDHLRSAHKGMLDGGCVAAAIDNLDDVSNSTCASSAVLNSELNTILETLEKSGDKSEEPMSGFKKEQHQSIVLKSFSRKDETTVTCLFCGEDIERFCGINNLLDHLESKHPDYQLIDSLTIPFATTSDSQLVEIDDNGLLKNLNTFDCGAEESDHQMVLSKEDMFLNKNLDSFNDGNNQQLSLSKSDELFVEKNLNSFNFSTEASDQQLVLNKDVEMFVEKNLKTFSCNDEESGQQLVLNKDDEMFVEKNFDSFNCNSEATDQNLCINDESFMDKETRYIVATDAVLSGKQLDISEKSMILIEKSDGTFDTSGNQVGLHENAETFIENNPNSFGKNYVISCGQKVINENSELFMETSNNDELSGNNVVFSGKQLGVNEKSEIFSEKSDNTFNTSDVATSGKQLSINEKGVFFESLSCSFNASDGVFTGKGLGVGKNHEMFVENATYPFETNHIVTANKQLELDGNNVEESNQFDKNDVVISGKQLRIDENGDLFVEKPTDSYETSGIMGVTNLVENQLNNFNQNETVGESHLVENQLNFNENLVNVGVSERGMVGKQLSFNEDNGENSELPNMDMVVDSINQMDLEGIADDFLKNVVPGRIEMSVIGDENRVENSSLVNGSDAAAASLTFEYQTKDDIRSLCSLICNCDVWGGKSGDIVSHMRATHGVILKHSPKEQVQKEGNAKQKKKVKEKNDAKTEKKKVYKKRSVIWRYFVEKDEKTATCLRCGIDFSRSSSRNLLTHLRRKHAIGCEEISSASNICRNSTVVKAISKNSGSVKREKNVKKSSVVWKYFKETKGSSDSCGYLCVLCNEDSGCNKFSTVLNMRNHLRQVHGIIFKKRPKRFSYVWKYFRVDEEAGDDQNCTCTLCGKELKNYSDVRVLKNHLKNSHADVFNGARQEKDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -