Lstr003373.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025331.1:19674589-19675191[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.2e-13 6.1e-10 40.0 0.0 1 40 13 52 13 57 0.90
Sequence Information
- Coding Sequence
- ATGCCTCGAACCAATAAGAGTACATTTCTGAGCTACAAGGAAGATGATATGAAAGCTGCCGTTGAAGATGTACGCCTACACAAGACATCTATACGGACAGCAGCTAAGAAATTTGGAGTTCCAAGGACAACCTTGAAGTACAAATTGGAGGGTAAATCACCAATGGAGAGAAGAATGGGCCCTCCCTCCATTCTAGCAAAAGAAGAGGAAGCTGAAATAAGCAGGTGGGTGGAGAACACCGCAAAAGCTGGTTTTCCAATCACTATTGAACAGTTGTGCATCAGTGTGGAGAGGTACTTGAAAGCAGTGAAACGTGATACTCCTTTTAAAGATGGAAGACCTGGCAGAACATGGGTCAAGAGTTTTCTTCGAAGAAATCCTTTGATTTCAAAAAGGGTCTCTCAAAATCTGACTGTCTCACGGGCCGGAATGGGACAACTCGCCGCGGCCAACTCGCCGCGGCCATCTCGCCACAGCCATCTCGCCGCGGCCAACTCGCCGCCGGGCCAACTCGCCGCCGACCCAACTCGCCGCGGCCAACTCGCCGCCGGACCAACTCGCCGCGACCAGCTCCACAAAAGGACTAATTCCCTTGGCATTTAA
- Protein Sequence
- MPRTNKSTFLSYKEDDMKAAVEDVRLHKTSIRTAAKKFGVPRTTLKYKLEGKSPMERRMGPPSILAKEEEAEISRWVENTAKAGFPITIEQLCISVERYLKAVKRDTPFKDGRPGRTWVKSFLRRNPLISKRVSQNLTVSRAGMGQLAAANSPRPSRHSHLAAANSPPGQLAADPTRRGQLAAGPTRRDQLHKRTNSLGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -