Lstr019799.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025332.1:11443837-11455512[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.2e-14 1.1e-10 42.4 0.1 1 45 242 286 242 286 0.95
Sequence Information
- Coding Sequence
- ATGCCAAAACGCCTCACCTACGCGGAAATTCATCGAGCAACCTACACTGCTAAGAGTCCCTACATGTATGCAACGGCTGCCTGCCTTCCCTCAAGCGTCCGAGGCTTGCTCTTTTGGGAAGCAAATCGCACTCCTAGTAGACACCGCACCGCCGGCCAAGTCTCGATGCGCCGATGNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGTCTGCCGCTGGCCGCCGCAGCGGCGCCGCACCGCGCTGCCAACAACAACTCGACCGCAGCCGCACTCAACAACTGCTACAACGCGGCCGCCATGTTCAGTTCGGACATGTCGCCGCTCAGTCGCAAGAAACTGTCCTCGATGATGGCTAGCCGCGACACACCCATACTACGCACCGTCCTCGGTCAAGGTCAGGCCGGTCAAGGTCAAGGTCAGGCTGACTCATCGCAGCCTGTGCCACTGGTTTGTAGACCCGACAGCCATCTATCCAATCACAACAACGACAGCTACAGTCAGGATGCCGAAACGTCTGTGAAGTCAGAACAAATGCATGAAGACACTACCTCTCCCTACACCGACATTTCTGCTATGGATGAGGATGAAAAGAACAACAAATTGGCGTTGATGCACTCAACATCTCCTCAGTCAATGTACAACGACGGAACAGGAGGCGTGTCTTCGGCAATAGCCACCTATGTGCCGACCCAGAAACCGGAATGGAAGCGCTACAAGCAGTACACACGAGCCGACATCCTTTCGGCGATCGAAGCGGTCAGGTTAGGTATGAGCGCACTGCAGGCGGCGCGCAAGTACGGCGTACCCTCGCGCACTCTCTACGACAAAGTCAAGAAGCTCGGCATCACCACAAGTCGGCCATTTCGACGGGGCAGCTCCAACGGCAACGGAGGTGTTGGCCTCAACTATTCGTCGTTCAGTGGAGCAGGCAGCGGCGGTGTTCCAGCGCTGAAAGGCGGTGACGATGATCCGGGCGCACCAGGCTACATGCGCGTGGAATACGGTGGCTTCTTACAATATCAGCTGATCGATCACGGCAATGGCGGCGGCGGCGGAAAACAGCTGACCGATCAGCTGATCGATAGGGAAGGCGGCGCGGGGGGAGGGGGCGGAGGCAACTTGAGCGGCAACTCATCCAGTCCGGGAAACAACGTTCGCTCGCCCAGTCCCAACTTGATCAAGTACGCACATAGAAACAGCATAACTCCTTCACCGTCCCCCTCGCAACAGCAAAGCCAAGGAAACGACGACATGGATGATGACGATGATGATGATGTGGACGAGAGAGGTGGGGATAAAATGCATCACGATGACGAGGACCAGGTTGAGGATTTGTCAGTGAGTAGGAAAACAGCTGATTCGCAACCGCCGCCATCACGTGTCATCATGCCGCCCATGAGTGAGGCAACGGCTGCACTCCTAACTACCGGCAGCGATTCGCATCAGAGTAGCCGAGACTGA
- Protein Sequence
- MPKRLTYAEIHRATYTAKSPYMYATAACLPSSVRGLLFWEANRTPSRHRTAGQVSMRRXXXXXXXXXWGLPLAAAAAPHRAANNNSTAAALNNCYNAAAMFSSDMSPLSRKKLSSMMASRDTPILRTVLGQGQAGQGQGQADSSQPVPLVCRPDSHLSNHNNDSYSQDAETSVKSEQMHEDTTSPYTDISAMDEDEKNNKLALMHSTSPQSMYNDGTGGVSSAIATYVPTQKPEWKRYKQYTRADILSAIEAVRLGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFRRGSSNGNGGVGLNYSSFSGAGSGGVPALKGGDDDPGAPGYMRVEYGGFLQYQLIDHGNGGGGGKQLTDQLIDREGGAGGGGGGNLSGNSSSPGNNVRSPSPNLIKYAHRNSITPSPSPSQQQSQGNDDMDDDDDDDVDERGGDKMHHDDEDQVEDLSVSRKTADSQPPPSRVIMPPMSEATAALLTTGSDSHQSSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -