Lstr036825.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- ttk
- Assembly
- GCA_014465815.1
- Location
- CM025326.1:9136269-9145643[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-15 1.7e-12 48.2 0.0 3 44 319 361 317 362 0.95
Sequence Information
- Coding Sequence
- ATGGCTGCCCAGCAGTTTTGCCTACGTTGGAATAACCACCAGCCAAATTTTATTTCGGTGTTTTCGAACTTGTTGAGCAGTGAGTCACTGGTAGATGTAACATTGGCAGCTGAAGGCAAGCATGTTCAAGCTCATAAAGTTGTGCTTTCAGCATGCAGCTCATATTTCCAGAGTTTATTCACGGTAAATCCTTGCCAGCATCCAATTGTGATATTGAAAGATATAAAATACTCAGACCTGAAAACAATGATCGACTTCATGTACTACGGGGAAGTGAATGTATCTCAGGAACAATTACCGGCAATTTTGAAGACTGCCGAGACTCTGAAGGTGAAGGGTTTGGCTGAGATGCCCGACCAGAACATACAGTGTGTGGCGACTGAGAATAAGAGCAGCACCGAATCTCATTCGCCATCCATGCTCAGACGTAAACGACTGAGGAAATCGTCAACCGGCTCTGGCTCTGGTTCCACTGAACAAACCACTGCTGGCAGTGAGGAAATGGGAGGGAGTGGTGTGGCGTCTTCTAGTCCATTAACAGTGAAAGCCGAGGCTTTGAGCGAAGGTGAGAGCTCGCTGCGTCATGAGCCTAGCACAGACTCTGAGCATGGACTTCCTTCTCAAGATAGTGTTGAAGATATGAACGAGCAGTCAGCCAATCAGTCAAGCCATCAATCGGCTTCTCAGCCGCAATCATCAGGACATCATCCTCCGCCTCAAAATCAGTCATCCACATCGTCCGATGATAAGAGTGATAACACGCTCGGCCGATCCTCAAGCACTGAGGACAATAGTTCTCCGAGCGCCTCTTCGCAAACACATTTCTCAACAGGAGGGTGGGGCGAGCCACAGATGATGCACGGTCATTCCCCCCACTACCCCGCCGCAACTGCGCCGCTACCGATGAAGGCGCCCCGCGCACCGCACCGGCGCCGCATTAATCCGCAGCAGAGCGAAGCGTTTCGCGAAGCGCTGGAAGCGGTCAGAATGGGCAGGCTCGGCTTCTGCAAGGCGGCCAAAACGTACGGCGTTAACAACCGCACACTCTGGCTGGAGTACAAGCGACTCGGCTACCCGTTGGCCAGACCAGGCCCTAAACATGCCAACAACTCGGCAAACTCGACAACAAGCTCGACAAGTGTGACTAGTTCCAGTGGGGTCAAGTGTGAAGAACGGGGATCGCCCACATTGTCTCCCACGGATCGCTATACCCCCAACGCTGGCACCCCTCTAATGCCCACCAGCTATTTCGACCCCGGTTACCCCTTCAATCTGTCAGGTCTGCAACCCGTCAACCCGGAATCTTTCCCCTCAAACCCCCCTTCCTCATCCTCGGGTCTACACGAGATGTCACGCAGTCATCCTCATCCTCATCATCATCGCGGCGGAGCCCATCATCATCAGCAGCATCACCACCTGCATCAGCTGACTAGTGGGGCGGGGCATAAGTTTGCCACCCCCTCCCCGCCCAACGGCGGCGGTGGCGGCACGCCTTCGGCCAATGGCCAGACGGGAGGTGGGGGAGGGGGAGCGGCTGCGTCGTTCGAGTACTTCGACTCGCAGTGA
- Protein Sequence
- MAAQQFCLRWNNHQPNFISVFSNLLSSESLVDVTLAAEGKHVQAHKVVLSACSSYFQSLFTVNPCQHPIVILKDIKYSDLKTMIDFMYYGEVNVSQEQLPAILKTAETLKVKGLAEMPDQNIQCVATENKSSTESHSPSMLRRKRLRKSSTGSGSGSTEQTTAGSEEMGGSGVASSSPLTVKAEALSEGESSLRHEPSTDSEHGLPSQDSVEDMNEQSANQSSHQSASQPQSSGHHPPPQNQSSTSSDDKSDNTLGRSSSTEDNSSPSASSQTHFSTGGWGEPQMMHGHSPHYPAATAPLPMKAPRAPHRRRINPQQSEAFREALEAVRMGRLGFCKAAKTYGVNNRTLWLEYKRLGYPLARPGPKHANNSANSTTSSTSVTSSSGVKCEERGSPTLSPTDRYTPNAGTPLMPTSYFDPGYPFNLSGLQPVNPESFPSNPPSSSSGLHEMSRSHPHPHHHRGGAHHHQQHHHLHQLTSGAGHKFATPSPPNGGGGGTPSANGQTGGGGGGAAASFEYFDSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857745; iTF_01353632; iTF_01353839;
- 90% Identity
- iTF_00857745;
- 80% Identity
- iTF_00857745;