Lstr037095.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- bab2
- Assembly
- GCA_014465815.1
- Location
- CM025326.1:8929449-8939933[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.001 1.2 10.2 0.0 1 35 259 293 259 298 0.90 2 3 2e-12 2.4e-09 38.1 0.0 2 37 310 345 309 350 0.91 3 3 0.098 1.2e+02 3.9 0.0 16 34 365 383 361 390 0.87
Sequence Information
- Coding Sequence
- ATGACAGCTCAACCATTTTATAGTATGAAATGGGAGAATTACTTCTATCATGTCAGTGAACTGTTTCATCAACTTCTAGATTCTGGTTCTATGTCTGATATTACTCTGTATGCTGAAGGGACAAAGTTGAACTGTCACAAAATACTCCTGTCAGCCTGCAGTCCATATTTTCAGGAAATTCTTTCGAATGTTGGTTCAAAAAATGCTGCAATTATCATAAGCGGAATCGAAGGTGAAGATGTCAGATCATGCATTGAATTCATTTATAAAGGAGAAGTTAATGTTACCGCTGATCGTTTGGATTCAGTTTTGAAAGCTGCAGAAGCCTTAAAAATTTGTGGACTCACCGATGTTAAACGTGAAATAAACGAAACTGATCCCACAATAATTGTTAACAACCAATCAGAGAAAGACAGTGGCAGTAAACTTGTATTGAAGCGTCAGTCGCCTTTATCAAACAATAAAACTAAGGGGGAAATCAGTGCGAACCCAAACAACCATAAACGGAGATCCGAAGAAGAGAGGCCATTTATCGTTCTTCCCGAGAATATGCTTTTTATGAAAGATACCGAGGAAGTCGTGGGGGAAATCTGCGAAAGCGAATCAGAGAATATAAGTGAGAGCACAATTCAATTAGAACGAGGCAATGAAGCAGATAGCAACCATTTGACTATTGAGTTGAATATCGATGAGAACAATTTAGTGGACTGTGGTGATCTGAAAGTTGACGATATGAGAATCCTCAAAAGGAAAGAAAATAGAAAAAAGTTATACAGCGAAGAAGCGATGCAGGCTGCCCTGGAAGACATGAAATCTGGTGAAAATCTTGTCAAATCAGCAGAAAAGCACTGTGTGCCAAAGACGACACTATACTGTCGAGCACGGGCTATAGGTGCGTGTCCAAGATTTAAGAAGAGAGGATATCCTAGGGAGAAGATGGTGGCGGCTCTTCAGGCTGTAGCAGGTGGATGCAGTTTGCAGTATGCTTCTAGAGAGTATGGCATTCCCAAAACTGTACTATGGAGAAGAGCGAAAAAGCCATTTGATAAACTACGATCATTGAGTCCAGATGCAAGTACGACTGTGGAAGATAATGTGTCTATAAGAAGGGTGTCTCCTCAATATCAGATACCTAAAGCAACTCTGTTTAGATGGGAAAAAGTTGGTGCTGCTAACAAAGAAACCGAGGCGACCTTTTTGGAAAGTCCTATGACTGTAGATGAGGAAATTAAAGAAATAAAAGGTGAATTGTTGTCTGTTGAAAGTGAAAACGATGAGGAGATTGTCGAGGTGGCATCTTCAAGTAACATGGAAGAGGATAACAATGATCTACAAGTTAATTATCTAGAAAATACTGGATTCTCGAACTCTTCAATAATTATATTGTCCTCAGTCGAACAACATAATGGCGAAAATAAATTCACTAATCTGAGAGGAACACTTAGTGAAGAAATATTCGTGAAAAACGATGATATTAATGCATCTGAATCGCAGCTAGCGAAAAAAGATTAG
- Protein Sequence
- MTAQPFYSMKWENYFYHVSELFHQLLDSGSMSDITLYAEGTKLNCHKILLSACSPYFQEILSNVGSKNAAIIISGIEGEDVRSCIEFIYKGEVNVTADRLDSVLKAAEALKICGLTDVKREINETDPTIIVNNQSEKDSGSKLVLKRQSPLSNNKTKGEISANPNNHKRRSEEERPFIVLPENMLFMKDTEEVVGEICESESENISESTIQLERGNEADSNHLTIELNIDENNLVDCGDLKVDDMRILKRKENRKKLYSEEAMQAALEDMKSGENLVKSAEKHCVPKTTLYCRARAIGACPRFKKRGYPREKMVAALQAVAGGCSLQYASREYGIPKTVLWRRAKKPFDKLRSLSPDASTTVEDNVSIRRVSPQYQIPKATLFRWEKVGAANKETEATFLESPMTVDEEIKEIKGELLSVESENDEEIVEVASSSNMEEDNNDLQVNYLENTGFSNSSIIILSSVEQHNGENKFTNLRGTLSEEIFVKNDDINASESQLAKKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857772;
- 90% Identity
- iTF_00857772;
- 80% Identity
- iTF_00857772;