Lstr041590.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- mbr-1
- Assembly
- GCA_014465815.1
- Location
- CM025325.1:24212814-24222171[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-12 4.8e-09 37.1 0.0 2 38 153 190 152 195 0.90 2 4 1.1e-12 1.3e-09 38.9 0.1 1 39 206 244 206 247 0.94 3 4 1.1e-17 1.3e-14 54.9 0.0 2 45 262 306 261 306 0.97 4 4 6.6e-18 7.8e-15 55.6 0.0 1 43 313 356 313 357 0.95
Sequence Information
- Coding Sequence
- ATGTTTATTTGTGTGCAGGTTGTGCTTGACGCTGCCAGATCAACGGATGTGGACATGCCCGAGGGGCCCCCGCCGGCCGGCCCCACGGCCACCCTCGTCTCCAGCATCGAGCTGCAAACGTCGACGCCGCCCGCTGGTAAGGATTTCATTGAGGGTGTTCAAACAATGAGGAGTGAAGATGGCAAGGAGGTGAAAGTGAAATTCGAAACATTGAGAGCCATGGAACAGGGAGAAACACTGGATATTGACAGCCACATGTCTGAGAGGGGTGATGATGAACATGAACATTCAATGCATACAATGATGATCACGCCTGAGCTGCTGGGCCTCATTCCACCTGGCCATTCCAGTGAATTGGACATGAACGGCAGCCAGTCGGACTGCGGCAGCTCGGTTTGCGGCAAGAACTGCGGGGGCGGCGGCAGCGGCGGGCCAGGCATGAACAAGAGCTGGTCGCAGGAGGACATGGAGCTGGCGCTGGACGCACTGCGCAACCACAACATGAGCCTGACGAAGGCGTCGACCACCTACGGCATTCCGTCCACCACGCTGTGGCAGCGCGCGCACCGCATGGGCATCGACACGCCCAAGAAGGACGGCCCGGCCAAGTCGTGGACCGAGGATGTGCTCAACGTGGCGCTCGAGGCGCTGCGCAACGGCAGCATTTCGGCCAACAAGGCTAGCAAGGCATATGGTATCCCGAGCAGCACGCTGTACAAGATAGCGCGCCGCGAAGGCATTCGACTGGCAGCGCCGTTCAATGCGGCGCCGACGACTTGGAACCCGGAAGACCTGGACCGGGCGCTGGAGGCGATCAGGTCGGGCACGACCACCGTGCAGAAGGCGGCCACCGAGTTCGGCATTCCGTCGGGCACGCTGTACGGCCGCTGCAAGCGCGAGGGCATCGAGCTCAGTCGCAGCAACCCCACGCCCTGGTCCGAGGACGCCATGAACGAGGCCCTCGAGTCTGTGAGGATTGGCCAGATGAGCATCAACCAGGCAGCCATCCACTACAACCTGCCCTACTCGTCGCTGTACGGCCGGTTCAAGCGCATCAAGTACGAGGCCGATCACGAGCACGAGCACACCAACGAGGTGGGCTCGACGAGCGACGTGGACGGCAGCGGCGCCCACACGCCTCACACGCCCCACACGCCCATGTCCGGCGGTGTGCCCACGCCCCACAGTGTGCACAGCACTCACAGTGTGCACAGTGTACACAGTGCACACAGCACTACATCGGCGGCTCCACCCACCTCGGTGCCGCCTCCTGTCTCTTCGGTGCAGACCTCTGTCAACGCACCTCCGCCCCCTCCACAACAACACACACCCCAACCCCCTCCCCTTCCGCACCCGCCCATGCCGCACATTCAGCCGCAAATCATGCTCCTCCAATACCAGCAGGCGCCCCCTCCGCCCCTCCACATGTACCAGCCGGCGCCCAGCTGA
- Protein Sequence
- MFICVQVVLDAARSTDVDMPEGPPPAGPTATLVSSIELQTSTPPAGKDFIEGVQTMRSEDGKEVKVKFETLRAMEQGETLDIDSHMSERGDDEHEHSMHTMMITPELLGLIPPGHSSELDMNGSQSDCGSSVCGKNCGGGGSGGPGMNKSWSQEDMELALDALRNHNMSLTKASTTYGIPSTTLWQRAHRMGIDTPKKDGPAKSWTEDVLNVALEALRNGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWNPEDLDRALEAIRSGTTTVQKAATEFGIPSGTLYGRCKREGIELSRSNPTPWSEDAMNEALESVRIGQMSINQAAIHYNLPYSSLYGRFKRIKYEADHEHEHTNEVGSTSDVDGSGAHTPHTPHTPMSGGVPTPHSVHSTHSVHSVHSAHSTTSAAPPTSVPPPVSSVQTSVNAPPPPPQQHTPQPPPLPHPPMPHIQPQIMLLQYQQAPPPPLHMYQPAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -