Lsuf008377.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402546.1:838050-843655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.5 2.1e+02 3.6 1.5 3 21 443 461 441 465 0.91 2 12 0.0065 0.56 11.7 1.0 2 22 487 507 486 510 0.89 3 12 0.0022 0.19 13.1 2.3 1 23 524 547 524 547 0.97 4 12 0.071 6.1 8.4 2.8 3 23 554 576 552 576 0.90 5 12 0.026 2.2 9.8 0.0 2 21 627 646 626 647 0.95 6 12 0.0015 0.13 13.7 0.9 3 23 706 725 704 725 0.97 7 12 0.00035 0.03 15.7 0.9 1 23 731 754 731 754 0.96 8 12 1.2 1.1e+02 4.5 0.3 2 20 773 791 772 793 0.92 9 12 0.086 7.4 8.1 0.1 2 23 803 826 803 826 0.95 10 12 0.049 4.2 8.9 7.2 1 21 834 854 834 856 0.94 11 12 0.018 1.6 10.3 2.3 1 21 862 882 862 887 0.93 12 12 0.3 26 6.4 0.4 1 23 893 916 893 916 0.94
Sequence Information
- Coding Sequence
- ATGTTATCACCTCGAGAAGATGATGACGACGATACGCACCTCTGCATCAAATGCAACTTGACCATCGTCGGCCTCGACAACTATGTCAAACACAGGAAGGAGCGATGCGGAAAGAAAAATAAAGAGCTACCACCTATAGACACTCTGGACCCGACATACAGTCTAGGAGCCGACGTATTCTTCCAATCTTTAGAACTACAGAGCAGTGTCAAAAAAACTGTTTTATCCAGACTGACTCCACCGATTTCGAAACCGAGTATAGACAGGAAAAGTGCCTTAGTAATCCCATCAACTTCAAGAGCTCAAATGAGTCCGCTAGAAACGAACCTTAGAGGAGAAGATTGGATTGGAGGACACACGCTAAGAATCAGTGGAAATGAAGAAGATAATCAGACGAAGCTGATAAACGCTGTGGCTAGTATCAGTGGAGCTGCCAAAAAAGAAACTAACTCTTCTTACACGATAGGATATAATGATTATAAGGGAGACGAAGAAAGTGATGAATCCGAAGTATTCGAAGAAGATGATGACGAAGAACATACTGGTGGTAAATGGAAGCCTCCTTCGAACTATACTGGAGGAAAATGGCGACCAGCATCTCCAGAGCATGATTGGGATGACCAAGAACCTTCGGCATCTTGGAAAACGCTACTGCCCGAAGTAGATCGTGACGAAGACTATGATGCTCCACCACCTGGATATACCAAAGGCAAATGGATACCAGGTGCAAACGAGAAGACCCAAATAATGCAAACAACTATACAGACCAAAGGGTCGGTTCATTACTGGTGCGGACCCTGCAATAGAAGGTTAGGGTCCAGAACCATTTACGATAAGCACTTAAGGTCCAGCCTCCATTTGAAAAAAGTACTACCAGAGCATGAGTTGGAATTTTCTGGGCATTTAGAACCTATGAAAAGTATGGAGAAACGTACAGGAAGACCATCAAAATTTGTTAATGATAGCATCTACTCACAAGTCGCAAGGAAAAAGAGACAAAAAGGACCTAAGCCAAATGTCAAAATTGAAATCAAGAAACGGAAAAGGAAGTCATACTTTGTCCACTGCGCTGGCTGCAAGTCTCGTGTCAGAGAACATCTGATGGGAAAGCATCTTATCTCCCATTACCACTTCCGGAAAGCAGCAGGGGTCACCAACACTTTGTATCAGCAGCTGATCTTAGACAATATTGATGCTATCGTTCATCAGTCACCATTCCAATGCAGCCTTTGCAAATTCTACACCAACTGGCTCTCAACCTTCATGCAACATTGGTACTCTGAAGAACACGAGTGGGCCATGGCGTTCACAGAGGGTATCTACTGGTGCTCATTCTGTAAGTATGAATGCAAGACTTCACAAGAAATGCTCGAGCATTTGAATGGATCTGATCACAGTGAAGTTGTTGCAGTCATCAATAGATCTATGCCTATTATCATCAGAAAGAAAACTGTACTGAAATGTGAGACTTGCTCTGAAGTGTTTAGGTTCAATATAGAACTGAAGAAGCATAATCAGAAAACTGGTCATCCACTAGCATATACAGCAACAGACACCTATCAGGAGCTGCATCAGTGCCAGCAGTGTAATGCAAAGTTTAAATCATCACTAACTTTAGCTGCTCATTTAAAATCTAAACACAAACAAAAGCCACATCTGTGCTTGGTCTGTTCTAAAACCTTTGATTCTTCAGAAGAAGCTAAGCACCACCGCCAGACTTCCGAGCACAGGATCAATCGTAAGGAACTCTTGATGAAGCAAGGGATCATCACGAAGGATTTGCGTAAGAAATGTCCTTATTGTCCTGGGGATATCATGATGAAGAACATACTAGTACTAAAGGAACACATCCGAACATTCCATCCCGATATAAGGAAAACCTGCCCAAAATGTGGCATGGAGTTCATACTCTCCCAAGAGGTGACCAGCCACATACGAGCCAACGCTTGCCAGTTCCAAAGTTCCGCGCGCGTCAACTCTTCAGTCTTCTGGAACTGCAGCCAATGTCTCTTCACCACTGACTCTCAAGCCGAATGCTACTTTCACGAAGTGTTGCACGAGCCTCCTGAAATGGTCAAGAAAATTGGTTCAGAGAAATTGGTGGACAAGTACGGATGTCCGATTTGCCAGAAGTATTTCAAGAAAGCATCTCTTCGCCAGCATCTGCGGCAGCATACTTTCGAAAGACCATTCGTCTGTACAATCTGTAGAGCGAATTTTACGAGACAGACCAGCTTGTCTAACCATGTGAAGTATGAACACGGAGATGCTGTGAAGGTCCCGAAGGTGCTGACGGCTGTTGAGAGAGACGAGTGGCGGTGTGAGAAGTGTATGATGAGGTTTCCAAACAAAACGGTGCTCGCCCGTCATGCCTGTGCCTCCAGATTCCTCACCAGCGCCGACCGCAAATGTGACCTCGAAGACTGCACTTATGTTGCTGCTAGTGCTCTGCAACTGGCTAAACATCAACGTATACACGGCATAACGCGTGCGGAACGTCACAAGTGCTCACAATGCCCATTCAAGAGCTCTCAAGCCAGTCATTTGAAGAGGCATCTTCAATGCCACACAGGCAATAAACCGTATTCCTGCCCACACTGTGAATTTTGTAGCGGAAGCCTGGAAAACCTGCGCAAGCACGTGCTACGCAGTGGTCGGCACAAGGATGTGTTTCTCTATCTTTGCAAGCTTTGTGATTATCAGACGAATATGGCTACTGAATTCCGGATTCATTTAACCTCCGCACATCCAACAGATTTTAATTCGAAAACTGCTGTGCAAGCTGCTAAGGTTCATTTAATGAAAAATTTATAA
- Protein Sequence
- MLSPREDDDDDTHLCIKCNLTIVGLDNYVKHRKERCGKKNKELPPIDTLDPTYSLGADVFFQSLELQSSVKKTVLSRLTPPISKPSIDRKSALVIPSTSRAQMSPLETNLRGEDWIGGHTLRISGNEEDNQTKLINAVASISGAAKKETNSSYTIGYNDYKGDEESDESEVFEEDDDEEHTGGKWKPPSNYTGGKWRPASPEHDWDDQEPSASWKTLLPEVDRDEDYDAPPPGYTKGKWIPGANEKTQIMQTTIQTKGSVHYWCGPCNRRLGSRTIYDKHLRSSLHLKKVLPEHELEFSGHLEPMKSMEKRTGRPSKFVNDSIYSQVARKKRQKGPKPNVKIEIKKRKRKSYFVHCAGCKSRVREHLMGKHLISHYHFRKAAGVTNTLYQQLILDNIDAIVHQSPFQCSLCKFYTNWLSTFMQHWYSEEHEWAMAFTEGIYWCSFCKYECKTSQEMLEHLNGSDHSEVVAVINRSMPIIIRKKTVLKCETCSEVFRFNIELKKHNQKTGHPLAYTATDTYQELHQCQQCNAKFKSSLTLAAHLKSKHKQKPHLCLVCSKTFDSSEEAKHHRQTSEHRINRKELLMKQGIITKDLRKKCPYCPGDIMMKNILVLKEHIRTFHPDIRKTCPKCGMEFILSQEVTSHIRANACQFQSSARVNSSVFWNCSQCLFTTDSQAECYFHEVLHEPPEMVKKIGSEKLVDKYGCPICQKYFKKASLRQHLRQHTFERPFVCTICRANFTRQTSLSNHVKYEHGDAVKVPKVLTAVERDEWRCEKCMMRFPNKTVLARHACASRFLTSADRKCDLEDCTYVAASALQLAKHQRIHGITRAERHKCSQCPFKSSQASHLKRHLQCHTGNKPYSCPHCEFCSGSLENLRKHVLRSGRHKDVFLYLCKLCDYQTNMATEFRIHLTSAHPTDFNSKTAVQAAKVHLMKNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00686811;
- 90% Identity
- iTF_00377575;
- 80% Identity
- -