Lsuf027083.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402569.1:6368653-6387182[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0047 0.41 12.1 1.4 1 23 252 274 252 274 0.98 2 11 0.0056 0.48 11.9 8.5 1 23 281 303 281 304 0.94 3 11 0.87 75 5.0 2.6 1 23 308 330 308 330 0.97 4 11 0.4 34 6.0 2.0 1 23 335 358 335 358 0.87 5 11 0.0033 0.29 12.6 0.2 1 23 362 385 362 385 0.94 6 11 4.4 3.8e+02 2.8 0.6 3 22 399 418 398 422 0.89 7 11 1.2 1e+02 4.6 0.7 2 23 473 495 472 495 0.95 8 11 0.015 1.3 10.5 0.6 2 20 511 529 510 532 0.91 9 11 6.3e-06 0.00054 21.2 1.4 1 23 538 560 538 560 0.99 10 11 1.3e-05 0.0011 20.2 5.1 1 23 567 589 567 589 0.98 11 11 0.0001 0.0088 17.3 1.3 1 23 595 618 595 618 0.93
Sequence Information
- Coding Sequence
- ATGTGCCTTGTTATCAGCCTTCGATTGTACTCCATCAGCAAATACAAATTGGAACAAGCCTTCCAGAATCTTACTGGATTATCTTTACAACAAGATGACCGCTCGCCGCAAAATCTTTGCTTACAATGCGCGACGCGGCTTCTTAACTACAACAAGTTCAGAGAACGGACCCTGAAAGCTGACTCCATCATGGTAGAACTTCTGAAAACGCATACACACCTAACCGACAACGCATTGCAGTCAGTTTCCAACGACATCAACCAACTACAACCTAAGCTTCAAGAAAAGTCATTCTCTCCTAACCATTATGATTTTTTACTGGAACACCTAAACTCGCCGAAAGAAGAAACAGACGACTTAGACTTTAGTTCTGTAGATACTTTGGACATTAAAGACGAAATCGACTCTGAGAACTCGGACTCTAGAAGCGAAGTATTCGTAGATGATTTCAGTTCGAAAGACGAATTCAAGAACACAGAAATATCTGATAACGAAAAAGAATTGGTATCGGAAAAAGGTTTCGACACCGATGATAGTCTTCCTCTAGAAGTTGCTAGAAAGAAGAAGAGAGCGCCGGCTAAAGAAAAGAAAGCTAAAAAGTCGAACACAGAACCTAAAATAGATAGGCGGAGAAAGCCTTTCTTAAACCAAGATCTCAATGAGACGTTATTTAGTATAACTGATCTGTCATTAGATGAACAATTAGCTGAAGTTAGGAAAAGGCAAGAAACGGATAATTACAAGCATGCAGTGTTTAAATGCACCGAATGTTTTAAAGGGTTTTTGGATCAAGATGCTTACTCCAGTCATATGACTAGACACACGAATGAATGCGGCGAGCATAGGTGCGATATTTGCAAAACGCATTTTAAGCAATCACACGCACTCCGCAAACATGTTACCGCTCATCATCTGCAGAGGTTTAGTTGCAACAGCTGTTCATATGTAACCACGCATCGACAAACCGCGCGGTTGCATGAACGATGGCATAAGGGCACCAAGTATCAGTGCCCGCATTGTAATCTGGAGTTTCTAAAATTCACAACATACATGGGTCACGTCCGCATAAAACACCCTTCAGACTTCGTGTGCGAGCTATGTGGTTACTCCTTCGTCAGTGCTAAAGGCATTGAATTGCATAAGAAACTTAAACATAGAGGGGATGAAACCACCATACCAGAAAACGGTCCATACTGCGAGCCTTGTAATGTCCGTTTCGTATCGTCGGAGGCACATCGGAAGCATATGAAAGTATCCGCGCGCCACGCCGGCTCAGATAGAGAGAACAATAAGCCCACGCGTGGGCGAAAATGCAGGGAACAGGTCGAGAGGGAAAAGGAAATGAAGGACAACACAGAAGATGATGACAGAAGGAGGATGTATCCGAGCCAGTTTAGAAAGGCAGAAGGGCCAATATCTTGTGAACAGTGCGGCATGCAGTTAGAAGACTCACGCGCATACCACGGTCACTTCCGCCGGATGCACCCCGACAAGAACCGAACCAACTACCCGTCTATGAAGTCTCCTTGCATGTGTGAGGTTTGCGGACGAATATTTCAGAGCTACGCATTACTGAAGGATCATAGATGGGTACACACAGGCGAGCGTCCGTTTAAATGCGAGCAGTGCGGGAAGAGTTTTCGTATGAAGCAAAGGCTGGTCGCACATAGACGTGTTCACAGTGAAGAAAGAGCTAGCTATGTTTGTTCTGTCTGCGGGAAACACTTCTCAACCCACAGCAATAGACAACGACACATGTTTATACATACGGGCCTAAAGCCGTTCAAGTGCGAGATGTGTGGCAAGGGCTTTAAGCATGCAAGCGAAAAGCGTGCTCATGTCACATACGTGCATCTTAAGAAGCCTTGGCCGAAGCGAGCTCGCGCTAAACAACTCGATAGACCGGGCTCGCCTACGACGGAAGGTGCGAGCGAGATAGACATACAGCCAGTGTGGCCAGCTTGCGACCCCAAACTAACTGATATTAATTTGCTGGACGACAAACCTGTCTACTATAGATAA
- Protein Sequence
- MCLVISLRLYSISKYKLEQAFQNLTGLSLQQDDRSPQNLCLQCATRLLNYNKFRERTLKADSIMVELLKTHTHLTDNALQSVSNDINQLQPKLQEKSFSPNHYDFLLEHLNSPKEETDDLDFSSVDTLDIKDEIDSENSDSRSEVFVDDFSSKDEFKNTEISDNEKELVSEKGFDTDDSLPLEVARKKKRAPAKEKKAKKSNTEPKIDRRRKPFLNQDLNETLFSITDLSLDEQLAEVRKRQETDNYKHAVFKCTECFKGFLDQDAYSSHMTRHTNECGEHRCDICKTHFKQSHALRKHVTAHHLQRFSCNSCSYVTTHRQTARLHERWHKGTKYQCPHCNLEFLKFTTYMGHVRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRGDETTIPENGPYCEPCNVRFVSSEAHRKHMKVSARHAGSDRENNKPTRGRKCREQVEREKEMKDNTEDDDRRRMYPSQFRKAEGPISCEQCGMQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRIFQSYALLKDHRWVHTGERPFKCEQCGKSFRMKQRLVAHRRVHSEERASYVCSVCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHVTYVHLKKPWPKRARAKQLDRPGSPTTEGASEIDIQPVWPACDPKLTDINLLDDKPVYYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377172; iTF_00377442;
- 90% Identity
- -
- 80% Identity
- -