Lsuf011399.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402570.1:10488603-10498935[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.088 7.6 8.1 1.4 2 23 108 130 107 130 0.97 2 10 5.9 5.1e+02 2.4 0.3 1 23 161 183 161 183 0.76 3 10 4.7e-05 0.0041 18.4 0.3 1 23 189 211 189 211 0.98 4 10 0.15 13 7.4 0.4 3 23 218 239 216 239 0.94 5 10 0.0068 0.59 11.6 0.8 1 23 245 267 245 267 0.97 6 10 0.49 42 5.8 5.2 1 23 273 296 273 296 0.96 7 10 0.0033 0.28 12.6 2.7 1 23 305 327 305 327 0.97 8 10 0.00016 0.014 16.7 1.5 3 23 340 361 339 361 0.94 9 10 9.8e-05 0.0085 17.4 2.8 1 23 367 389 367 389 0.98 10 10 6.6e-05 0.0057 17.9 6.5 3 23 397 418 395 418 0.95
Sequence Information
- Coding Sequence
- ATGTATTATTCACAACTCACAAATGATGGAGATATTAAAGATGAGAAAATACAGGAAGCAGATCCAATGGTCAAGGAAGAAGAGGATAGCCAAGGTCTAAACCTCTTTGATGATGCATACCTAGCACCAGAAGTTAGTCTCGAAATCCAGAGAATAAAATCTGATGATGAGCTTGATACAAATGATAAAGCCAAGAAAGAAAAAACTATAAAACCCAAAACAAAAGCAAAAGTAAAAAAAAAACTGTCCAATGATACCAGAAGTCCTAAAGTAACAAGAAAAGTAACAAAAAAAGATAAATTTGCTGACCATGATCCCAACAAATGCTTAACTTGCTTCAAATTGTATGAATCGTCTCTTGAACTGTCGAAACACTACAAAACTGACCACAGTATCGAACCTGGCAGTTTGAAGTCCGAGAATGGCATTGACATGACAGATAAATACACATTACATGCATCAAATGATCAAAAACCATTCTATAAATGCAATAGTTGTGGTGATTCCAATGAGGATGTAAAGGAAATGACTAAGCATGTGTTATTGCACAAATATGAGCGACCATATGTATGCAAATTGTGTGGTAAAACATACAAGACTGTCTATGAGATAGTACGCCACGGCCGCGTCCACAGTGGCTTCAAGTTATTCTGCCAGCACGGATGCGGGTACAGTTCTCCGTATCCTGGCGCTATGAGGGACCATGAGAAAAGGCATACGGATGAACGAAATTATACCTGCAAGACTTGTGGCAAAGGTTTCCTGGTGAAGACATGGTATGACCAGCATCAGAATATCCATAACAATATCAAACCGTTCGTCTGTGATTTCTGCAACATGGCGTTTCATATGCACAGGTATCTGGTCACCCATCGTAGTAAGAGGCATCCGGGGCTGTCGGCCATCACTAAGTACACTTGCACCCAATGTAGCTTCACTTGTGATAATAAGAATGGATTGACAATGCATATGGAGGAGCATGCAGAAAACCCTACAGAAGCGAAACTGACACTTCTATGTGACCTGTGTGGTAAGGGCTTCGCAAGAACCGACCACCTAACTAACCATAAGAATGGAAAGCACTTTGGAATCAAACCATTTAGCTGCAGCACCTGCAACAAACAGTTCCAGAAGAAGTTCAATCTAACAGTGCACGAAAGGATTCATACGGGCGAAGGCAGGCACCTCTGCTTGTATTGTGGCAAGTTCTTCGCACAGAAGAGCACTTTACATCGGCATCAGAAGAAACGCCATCCCGAAGAATATGATCGTACAAAAGAGCCGAGACCAACGTTGACTGAAGAGAATTAA
- Protein Sequence
- MYYSQLTNDGDIKDEKIQEADPMVKEEEDSQGLNLFDDAYLAPEVSLEIQRIKSDDELDTNDKAKKEKTIKPKTKAKVKKKLSNDTRSPKVTRKVTKKDKFADHDPNKCLTCFKLYESSLELSKHYKTDHSIEPGSLKSENGIDMTDKYTLHASNDQKPFYKCNSCGDSNEDVKEMTKHVLLHKYERPYVCKLCGKTYKTVYEIVRHGRVHSGFKLFCQHGCGYSSPYPGAMRDHEKRHTDERNYTCKTCGKGFLVKTWYDQHQNIHNNIKPFVCDFCNMAFHMHRYLVTHRSKRHPGLSAITKYTCTQCSFTCDNKNGLTMHMEEHAENPTEAKLTLLCDLCGKGFARTDHLTNHKNGKHFGIKPFSCSTCNKQFQKKFNLTVHERIHTGEGRHLCLYCGKFFAQKSTLHRHQKKRHPEEYDRTKEPRPTLTEEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -