Lsuf026790.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lampropteryx suffumata
Gene Symbol
-
Assembly
GCA_948098915.1
Location
OX402569.1:2027954-2029510[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00038 0.032 15.6 4.2 1 23 164 187 164 187 0.95
2 10 0.00042 0.037 15.4 4.1 3 23 196 217 195 217 0.96
3 10 0.34 29 6.3 5.3 2 23 225 247 224 247 0.95
4 10 6.6e-05 0.0057 17.9 3.1 2 23 255 277 254 277 0.96
5 10 0.0014 0.12 13.8 7.7 1 23 284 307 284 307 0.93
6 10 0.0053 0.46 11.9 6.2 1 23 313 336 313 336 0.94
7 10 0.00016 0.014 16.7 0.7 2 23 344 365 343 365 0.98
8 10 0.0039 0.34 12.4 2.2 2 23 373 395 372 395 0.96
9 10 0.0021 0.18 13.2 3.3 2 23 402 424 401 424 0.90
10 10 5.9e-06 0.00051 21.2 4.1 1 23 434 456 434 456 0.98

Sequence Information

Coding Sequence
ATGGCGGCTGAAGTAAAAGAAGAACCAGATATCAAACTTGAAGATGCCCCCACACCTTCAGGATCGTACCCGTCCACACCCCAACCTTTACTAGCACCCTTATTATCCCTGCAATCCTTGCAGCTGTTACCATCCCTTCATTCCTTGACACAGTTACCACCCTTACCTCCTCTGCAACCCATGCCACAAACACATACCCAGACTCTATCACAAATACACCCCCAAGCACAGCCGCAAATACTTTCTCAGGAATTAGCACAAATGCATCCCCAGGAACTACCACCAATACCCAAGGAACTGCCAATGCCATCCTCTGATTTACAGTCCATAAAAGCCTTACCCCCTTCTCTCACAAGCACTCATCATGATGATGGGGTGATGAAGTTCATAAGTGTCAACAGTGATGTCCTCACGGACGAGCAGAGAGAAATGTATGAATCAGTACTTGCTACATGGAAGCCTGTAATGTACCCTAAACAGATGAAACGCTACATCTGCCATAAATGCAACAAGGAGTTCAAGAATTATCAAAATCTTTATCTCCATACCACGAGAGTTCATTCTACGGAAGACTCTGCTGTGTTATGTGATCAGTGCGACAAATCATTCAAGAATAAGCATTATCTGTATATGCATAGGATGAACAAGCATTACTCGGAGAGAGACAAATGCTATTGCCAGTTCTGCCTTCAGGAGTTCAGAACGAGACGGGCTTTGCATATGCATGTTAAGAGAATCCACCCGACCACATTACCCGAGATTAAATGTGGAGAGTGCGGCAAGCAGTTTAAGGTTCCTTACAAACTACGGCACCATATTGAAAGATGCCATAGAGCCGAGCCCGAGAAACACAAATGTCATATCTGCCAGAAAATGTACAAAACTCATCTCAATTTAAACAGGCATCTGCTGTTCCAACACACGAATATTGAACGTCATCAATGCGTGTTCTGTCCTATGACGTTTAAGTCGCGGCATCATATGAAACGGCATGTGTTAAATATACATCCTCCGCTAGAATCCAAAGTTCAGTGTTCCGAGTGCTTAAAAGAGTTTAAGAACGACCAGTACTTAAAAGAGCACATGCAGATGCATTCCTCTCCTGACACTAAAGTGAAATGCGAGCTTTGTGAGAAAACTTTCCACTCACCACTACGGCTTAAGAAGCATAAGAAAATTGTGCACCCAACGAAGCCGAAGCTCCGTTGCGAGAAGTGTGACAAAGAGTTTGCTCACGACCATTACTTGAAACGTCACAACGATTCAGTACACATGGAGATAGACGAGTCAAACTATGAACATGAATGCCCTCAATGCGGCAAGAAGTTCAAGATGAAGAAGTATTTAACTAATCATTTGCAGAGACACGAGCAGCAGCATTTGAAGCGGATATCGCAAATGGTGAAGACAGTGATGAAAGGTAAGGAAAAGAAGGAAGTGGCTCCGAAGCAGACAAGGGCTCAGAGGAAGAAACGGGAAGAGATTGAGTTTATAAAGTGTGAACCCATGTCTAGTTCGGACTCTGACTCGGGGGAGACTGATTCTGACTCTGAATAG
Protein Sequence
MAAEVKEEPDIKLEDAPTPSGSYPSTPQPLLAPLLSLQSLQLLPSLHSLTQLPPLPPLQPMPQTHTQTLSQIHPQAQPQILSQELAQMHPQELPPIPKELPMPSSDLQSIKALPPSLTSTHHDDGVMKFISVNSDVLTDEQREMYESVLATWKPVMYPKQMKRYICHKCNKEFKNYQNLYLHTTRVHSTEDSAVLCDQCDKSFKNKHYLYMHRMNKHYSERDKCYCQFCLQEFRTRRALHMHVKRIHPTTLPEIKCGECGKQFKVPYKLRHHIERCHRAEPEKHKCHICQKMYKTHLNLNRHLLFQHTNIERHQCVFCPMTFKSRHHMKRHVLNIHPPLESKVQCSECLKEFKNDQYLKEHMQMHSSPDTKVKCELCEKTFHSPLRLKKHKKIVHPTKPKLRCEKCDKEFAHDHYLKRHNDSVHMEIDESNYEHECPQCGKKFKMKKYLTNHLQRHEQQHLKRISQMVKTVMKGKEKKEVAPKQTRAQRKKREEIEFIKCEPMSSSDSDSGETDSDSE