Lsuf027041.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402569.1:5690916-5699052[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.17 15 7.2 0.1 1 23 27 50 27 50 0.92 2 10 0.29 25 6.5 3.8 1 23 82 104 82 104 0.98 3 10 0.0023 0.2 13.1 1.7 1 23 155 178 155 178 0.96 4 10 3.8e-05 0.0032 18.7 4.0 2 23 183 204 182 204 0.97 5 10 5.9 5.1e+02 2.4 2.0 2 23 212 232 212 234 0.84 6 10 0.0001 0.0087 17.4 1.4 1 21 238 258 238 263 0.94 7 10 0.00088 0.076 14.4 0.2 1 23 271 294 271 294 0.94 8 10 9.1e-05 0.0078 17.5 0.1 1 23 300 323 300 323 0.97 9 10 3.4e-06 0.00029 22.0 1.6 1 23 333 355 333 355 0.94 10 10 4.7e-05 0.004 18.4 3.0 2 23 362 384 361 384 0.96
Sequence Information
- Coding Sequence
- ATGAGAGAGGGGGGAAAAGGGGGCAAGGACGGGGGTGGAGAAGAAGCCAAGAAGAAGGTTCAATACGCGAGTTCTGTGTACAAATGTGAGCTATGCGCGATTGGGTTCTACACACAGCAGCAAGTTGAAGGGCACTTCGAATCGGCACATAGACCTAAACCCGGTCTAATTCCATGTAAACTTTGCTACGTGTACATAGAAGAATCTGCGATGACAAACCATGTTAACCTACACTATATGCAGTACAGATGCAAGATGTGTTCCCACACTGAATACAGCCAGCGAATGATGCAAATACACATCAAAACGCATCTGACAAAGCCGGTGCCCAACGCGGTTATTAAGATAGAAGGGAGTACTACCAAAAAGAGTAAAAAGAAAAAGAACAGCAAGACTTCAGCCAGCGAGCCACCCAAACCTGGTGATCTGAGGAAACTGTTGTCCAAAACTACTATAGAGGGATACAAATGTTTAGAGTGCGATATGTTTTTCAAGAATTCCCGTGCCCGTAAAAACCACGTCGCTAGATTCCACAGAGAAGGATTACAATGTGATCATTGCAAGAAGAGATTTGTCAATCGAACAACACTCTCCACGCATTTGAGATTGCACGAAGGACCATTACCCCGTGAAGAATGCCCGGTCTGCCACAAGCTAGTTCGTACCATACAGATAAAGTACCATATCCAGCGGCATCAGAACAAATCTCGGTATGAATGCAAAGACTGCAGCAAGATCTTCTCGCATCTCGCAACATACCAGGCACATTTGAAGTATTCTAGAGCACATGCGGACGATAATGTCTTCAAATTTCCATGTCCAATGTGTAACAAAGGGTATCCGTCTAAAGAAGCGATGCAGGATCATTTCAACTACCAACATCTTAGGAAAACTTCACACAAATGTCCCATTTGTGATAAGCCGATAGCGTCCCGCGCGAATGTCGAGAAGCATATATCGCGAGTGCACGGTGAAAAGAAGCAGCGTCCAAGAAATCACCAGTGTCAGACGTGCGGGAAGTCGTTTACTGATAAGAAAGCCTTAACACAACATGAAGTGATACATTCAGGCGCTCGACCACTTTCCTGTGACATTTGCCATCAAACATTCAAGCAAAAAGCGTCTCTATACACGCACAGGAAACGAGTACATAAAGTGCATCCCCCTAGCCGACAAATCCATTATATAGACGAACTACCCGCAACGTAG
- Protein Sequence
- MREGGKGGKDGGGEEAKKKVQYASSVYKCELCAIGFYTQQQVEGHFESAHRPKPGLIPCKLCYVYIEESAMTNHVNLHYMQYRCKMCSHTEYSQRMMQIHIKTHLTKPVPNAVIKIEGSTTKKSKKKKNSKTSASEPPKPGDLRKLLSKTTIEGYKCLECDMFFKNSRARKNHVARFHREGLQCDHCKKRFVNRTTLSTHLRLHEGPLPREECPVCHKLVRTIQIKYHIQRHQNKSRYECKDCSKIFSHLATYQAHLKYSRAHADDNVFKFPCPMCNKGYPSKEAMQDHFNYQHLRKTSHKCPICDKPIASRANVEKHISRVHGEKKQRPRNHQCQTCGKSFTDKKALTQHEVIHSGARPLSCDICHQTFKQKASLYTHRKRVHKVHPPSRQIHYIDELPAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -