Basic Information

Insect: Lampropteryx suffumata
Gene Symbol: -
Assembly: GCA_948098915.1
Location: OX402574.1:4708100-4710510[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.7 4.1e+02 2.7 1.2 2 23 2 24 1 24 0.91

2 16 0.21 18 6.9 0.9 2 23 49 71 48 71 0.96

3 16 0.19 16 7.1 0.6 2 23 94 115 93 115 0.93

4 16 4e-06 0.00035 21.8 0.2 1 23 119 142 119 142 0.97

5 16 2.1 1.8e+02 3.8 0.7 3 21 149 167 147 168 0.89

6 16 6 5.1e+02 2.3 0.0 1 10 175 184 175 190 0.86

7 16 0.19 16 7.1 1.0 2 23 214 236 213 236 0.93

8 16 0.66 57 5.3 2.7 2 23 261 282 257 283 0.89

9 16 1.3 1.1e+02 4.4 0.7 2 23 309 330 308 330 0.91

10 16 1.1e-05 0.00091 20.5 1.3 1 23 334 357 334 357 0.95

11 16 0.066 5.7 8.5 2.5 1 21 364 384 364 385 0.94

12 16 0.24 21 6.8 0.1 1 23 392 415 392 415 0.91

13 16 0.00015 0.013 16.9 0.5 1 23 422 445 422 445 0.95

14 16 0.00019 0.017 16.5 1.0 1 23 450 472 450 472 0.97

15 16 3e-06 0.00025 22.2 0.9 1 20 478 497 478 500 0.94

16 16 2.5e-05 0.0021 19.3 2.9 1 23 506 529 506 529 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.7	4.1e+02	2.7	1.2	2	23	2	24	1	24	0.91
2	16	0.21	18	6.9	0.9	2	23	49	71	48	71	0.96
3	16	0.19	16	7.1	0.6	2	23	94	115	93	115	0.93
4	16	4e-06	0.00035	21.8	0.2	1	23	119	142	119	142	0.97
5	16	2.1	1.8e+02	3.8	0.7	3	21	149	167	147	168	0.89
6	16	6	5.1e+02	2.3	0.0	1	10	175	184	175	190	0.86
7	16	0.19	16	7.1	1.0	2	23	214	236	213	236	0.93
8	16	0.66	57	5.3	2.7	2	23	261	282	257	283	0.89
9	16	1.3	1.1e+02	4.4	0.7	2	23	309	330	308	330	0.91
10	16	1.1e-05	0.00091	20.5	1.3	1	23	334	357	334	357	0.95
11	16	0.066	5.7	8.5	2.5	1	21	364	384	364	385	0.94
12	16	0.24	21	6.8	0.1	1	23	392	415	392	415	0.91
13	16	0.00015	0.013	16.9	0.5	1	23	422	445	422	445	0.95
14	16	0.00019	0.017	16.5	1.0	1	23	450	472	450	472	0.97
15	16	3e-06	0.00025	22.2	0.9	1	20	478	497	478	500	0.94
16	16	2.5e-05	0.0021	19.3	2.9	1	23	506	529	506	529	0.98

Sequence Information

Coding Sequence: ATGGTCTGTGTGTTCTGCTGTGAAAGTTACGAGGAGTCCTCGGTATTTCGAAAGCATATGGATAAAGAACACCAGTCGTTTTTACTGCGGAATGCGTTCGCACATTGCTCTGAAGGCTTTGTAAAAGCTGACTGCTCCGATATCCGCTGTCGTATTTGTCTCAAACCATGCGACAGTCTTGAGGATGTTGCAAATCACTTGAAAAAGAAACACCTGAAACCGTTGGTTATGACTGCTCCGTTAGGCATAGAGCCTTTTAACTTTAAACCGGAAAAACTTAGATGCGCAATTTGCGAGTCAAAGGCTTATAGCCTCAGACAGCTCAGCCGGCACACGCAGACTCATTTCCGAAGGTTCACATGCGAGTCTTGTGGAAAATCCTACGCTACAAACACCGCTCTACAAGTTCACATCAAAATTTCTCACATTATAAAAGGACATCTATGCCAAAAGTGTAAAACGCAATTTGATTCTATAGAAGCGAGGAGAAATCATTTACAAGAATCTCCTAAGTGTTGGTTATATGTATGCAATATCTGTGAATTGAAATACCCGATTGCATCTGCGGCCAAGCATAACGCCGAGATTATTGTGAAACATTCAACAGTGTACCCGTTCAGACTTCCCGGAAACTGTATGGTCTGTGTGTATTGCTGCGAATCGTATGAGGATCCATCGTCATTTAGAAAGCATAACGATACTGAACACCAGACGTTTTCTCTTCGAGTAGCATTCGCTCATTGCCCCGATGGTTTTATAAAAGCTGACTGTTCTGATATCCGATGCAGAATCTGTTTTAAACAGAGTGAAAATCTCGAAGAAATTTCTATTCATTTACGAAAGCATCATTTAATGATCGCTAAAGAATTGGATTTGTCAGTTCCTATGGGAATTCAGCCTTTCAATTTTAAACCGGAAAGACTTAGGTGCGCGCTTTGTGAGTCAAAAGCCTACAGCCTCCGACAGCTGAGTCGGCATACCCAGAGTCATTTCTTGAGATTCACCTGCGAGTCCTGTGGAAAGTCGTATGCTACTCATTCCACGTTGCAAGTCCATATCAAAGACTCTCACTTAAATTTATTAAAAGAACATTATTGCAGAAAATGTAAATCAAAATTCAGTTCAGCCGATCAAAAGAAACGCCATTTAATGGTCTCTGCGGAATGCCGCAAATACATATGCAGTGTGTGTGGTGATAGGTTTATGTCTAGCTACGGTAAACAGTTGCACATGGTAGAGGCTCACGGAATTGCAAGAAAACCTCACGTTTGCCCGGAGTGCGGTCAAGTTTTTACAGAGAAAAACACATTTATAGACCACTTCAAAATAGCGCACACAAACGATAACTTTATTTGTTCCTACTGTGGTCAAAAGTATGTGTCAAAAAAGGATTTCGAAGACCATCGGGTCACTCATACTAACGAAAAACCTTTTCCTTGCACGGTCTGTTCCAAGATGTTTTCTAGGAAGAAAAATTTAAACCAGCACATGTGGATACACAGCGAGTATAAAAGATTTGAATGCAAGATCTGCAACAAGAAGTTCAATCAGAGAGTCAGCTGGAAATCTCATTATAAAACAAATCATCCAGAGTTGACAAACTTTGAGCAGGAATACGAAAATAGCGCCAAACATATACAGTCTGTCTGA
Protein Sequence: MVCVFCCESYEESSVFRKHMDKEHQSFLLRNAFAHCSEGFVKADCSDIRCRICLKPCDSLEDVANHLKKKHLKPLVMTAPLGIEPFNFKPEKLRCAICESKAYSLRQLSRHTQTHFRRFTCESCGKSYATNTALQVHIKISHIIKGHLCQKCKTQFDSIEARRNHLQESPKCWLYVCNICELKYPIASAAKHNAEIIVKHSTVYPFRLPGNCMVCVYCCESYEDPSSFRKHNDTEHQTFSLRVAFAHCPDGFIKADCSDIRCRICFKQSENLEEISIHLRKHHLMIAKELDLSVPMGIQPFNFKPERLRCALCESKAYSLRQLSRHTQSHFLRFTCESCGKSYATHSTLQVHIKDSHLNLLKEHYCRKCKSKFSSADQKKRHLMVSAECRKYICSVCGDRFMSSYGKQLHMVEAHGIARKPHVCPECGQVFTEKNTFIDHFKIAHTNDNFICSYCGQKYVSKKDFEDHRVTHTNEKPFPCTVCSKMFSRKKNLNQHMWIHSEYKRFECKICNKKFNQRVSWKSHYKTNHPELTNFEQEYENSAKHIQSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -