Basic Information

Insect: Lampropteryx suffumata
Gene Symbol: -
Assembly: GCA_948098915.1
Location: OX402565.1:997312-1002389[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.19 16 7.1 0.2 1 23 311 333 311 333 0.96

2 12 6.1e-05 0.0052 18.1 3.3 1 23 337 359 337 359 0.99

3 12 7.9e-06 0.00068 20.8 0.6 1 23 364 386 364 386 0.98

4 12 6.9e-07 5.9e-05 24.2 1.1 1 23 392 414 392 414 0.98

5 12 0.0012 0.11 13.9 4.7 1 23 420 442 420 442 0.98

6 12 0.00011 0.0095 17.2 2.8 1 23 448 470 448 470 0.98

7 12 0.0009 0.078 14.4 1.1 1 23 476 498 476 498 0.98

8 12 0.002 0.17 13.3 1.7 1 23 504 526 504 526 0.97

9 12 7.5e-05 0.0064 17.8 2.7 1 23 531 554 531 554 0.98

10 12 7.6e-06 0.00066 20.9 0.2 1 23 560 582 560 582 0.99

11 12 0.0025 0.21 13.0 1.2 1 23 588 610 588 610 0.95

12 12 3.9e-05 0.0034 18.6 0.8 1 23 615 638 615 638 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.19	16	7.1	0.2	1	23	311	333	311	333	0.96
2	12	6.1e-05	0.0052	18.1	3.3	1	23	337	359	337	359	0.99
3	12	7.9e-06	0.00068	20.8	0.6	1	23	364	386	364	386	0.98
4	12	6.9e-07	5.9e-05	24.2	1.1	1	23	392	414	392	414	0.98
5	12	0.0012	0.11	13.9	4.7	1	23	420	442	420	442	0.98
6	12	0.00011	0.0095	17.2	2.8	1	23	448	470	448	470	0.98
7	12	0.0009	0.078	14.4	1.1	1	23	476	498	476	498	0.98
8	12	0.002	0.17	13.3	1.7	1	23	504	526	504	526	0.97
9	12	7.5e-05	0.0064	17.8	2.7	1	23	531	554	531	554	0.98
10	12	7.6e-06	0.00066	20.9	0.2	1	23	560	582	560	582	0.99
11	12	0.0025	0.21	13.0	1.2	1	23	588	610	588	610	0.95
12	12	3.9e-05	0.0034	18.6	0.8	1	23	615	638	615	638	0.98

Sequence Information

Coding Sequence: ATGTCTTCTCTCTGCAGAATGTGTCTTTCTAGCAATGTCAAAATGTATTGCATTGAAAACACCAAACTGAAGGAATCTTATGAAAATGTCACAAGTACCAAGCTTAACACAGGAGATTACAAACCCATATTAATCTGCTACATCTGTCACTTTCAACTGCAAAGATATAATAAGTTCTCTGCAATGTCACAACGAGCTGAAAAAACTATAACAGACATAGTTAATAAAGGCTTAAAAGTAACACAAGAGCTCCTTATAATGCTAAACCTGGGCATGTTGGAGAACTTTAATATTTCAACAATAGACATGGTATGCATTGATTCATATTTGAAAACATCAGTGGATGTAAAGGAAGAATTAATCGAAGACAAAATAGAATTACCAGTAAAAAAAATTAATGTGAATGGTAAAAAAGAGTTAGCCAGTTGTGTTTGCAGAGTGTGCCTATCTGGGAGTGTCAGGACTTATGGCATTGAATCTGTAGGATTGAAGGATGTATTTGAAAAGGTCACGAATACTGAGCTGAACACTGAAGATGGGCGGCCTGTGACCATTTGCTACATCTGCCTCTCCCAGCTGAAGAGATGCCTGCGACTCTCTGAAATGTGTGAAAAAGCTGACAAACTCTTAGCAAATGAAAACAATGGTGCAGAGGTGAAACAAATTACCACGCCTCTATTAAACCTAGAAACGGTATATAATATAGCAGTCGAAACTACACAAGCTCAACCTTCTCTAAATTCTGAAGATGCAAAATCATCTAAAATTAAATTAGAATTCATTGAAGATTCTGTTCAAACAATTGATGATATGAAAGTGATCGTCCAAATTAAGGAAGAACCTAATTATGTTTGTCAGGACAACGAAAACTCTCAGTCTGAACATGGTCCGATGAAAATTTTGCAAAACCACACTGCTGGAAAGATCCCCTATGCTTGCGATTTGTGTACAGACACTTTTCAAACAATCTCAGGATTAAACGAACACAACAAGATTCACCTTTCTAGATTCACATGTGACTACTGCACTAAAACATTTGGATATAAACAAAGATTGCTAAGCCATATGAAAACGCATGGTATAAATCCATACATCTGCACCCAATGCAGTAAAACTTACTCCGGGAAAGCTAGCTTAGAGAGACACATGGTAACCCATAGTTTAGAACTGCCTTATGTATGTGACATTTGTTTTAAATCATTTGCTGATCAATATTACTTAAAAAAACATATGGTTCGTCACACGGGGGTAAAACCGTATTGCTGTAATATTTGCAGCAAGGGATACTTCGAAAAACATAATTTAGATATTCACATGAGATCCCATTCTGGAATTAAACCATTCGAGTGCGAGACTTGCGGTAAAAAGTTTGTCGACAACAGCTGTAAGCTAAGACACTTGAAAATACACACCGGTGTCAAACCATATGCCTGCAACCAATGTAGTTTTAGATTCACAATCAAATCTCGCCTTATAATACACCTTCGATCTCACACCGGAATTAAACCATTTTCCTGCAGCCAATGCCCATCTAAATTCAGCAGCAAAGCTGTTCTGACAAAACACAAGAAGCTACACGAGGAAAAGCAATACCCGTGTAATAAATGCACTTGGTCGTTCTCTACTATCCGTTGTTTGCAATCGCATTTGAGAAAGATCCACAAAGAGAAGCGTGAGTATGTTTGCAGCGAGTGTAAGAAGGTGTATTATGCGCCCGGATCTCTGAAGATCCATATGAGAAGCCATACCGGTGAGAAGCCATATGTGTGCAAAGAGTGCGACATGAGGTTTACCTCCCCAACTGCTTGTACGAGACATGAGATGGCTCATGGGGGAAACAAGTACGAATGCAAAGTGTGCGGTAACAAGTATAGCCGCCCTGGCGGCTTGCAGCAACATACGAAGAAGAAACACGCCAAGTATAAATAA
Protein Sequence: MSSLCRMCLSSNVKMYCIENTKLKESYENVTSTKLNTGDYKPILICYICHFQLQRYNKFSAMSQRAEKTITDIVNKGLKVTQELLIMLNLGMLENFNISTIDMVCIDSYLKTSVDVKEELIEDKIELPVKKINVNGKKELASCVCRVCLSGSVRTYGIESVGLKDVFEKVTNTELNTEDGRPVTICYICLSQLKRCLRLSEMCEKADKLLANENNGAEVKQITTPLLNLETVYNIAVETTQAQPSLNSEDAKSSKIKLEFIEDSVQTIDDMKVIVQIKEEPNYVCQDNENSQSEHGPMKILQNHTAGKIPYACDLCTDTFQTISGLNEHNKIHLSRFTCDYCTKTFGYKQRLLSHMKTHGINPYICTQCSKTYSGKASLERHMVTHSLELPYVCDICFKSFADQYYLKKHMVRHTGVKPYCCNICSKGYFEKHNLDIHMRSHSGIKPFECETCGKKFVDNSCKLRHLKIHTGVKPYACNQCSFRFTIKSRLIIHLRSHTGIKPFSCSQCPSKFSSKAVLTKHKKLHEEKQYPCNKCTWSFSTIRCLQSHLRKIHKEKREYVCSECKKVYYAPGSLKIHMRSHTGEKPYVCKECDMRFTSPTACTRHEMAHGGNKYECKVCGNKYSRPGGLQQHTKKKHAKYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -