Lsuf002069.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402545.1:1001453-1009680[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 8.4e-05 0.0073 17.6 1.0 2 23 168 190 167 190 0.96 2 37 1e-05 0.00087 20.5 1.2 1 23 194 216 194 216 0.96 3 37 4.8e-06 0.00042 21.5 0.4 1 23 222 244 222 244 0.96 4 37 0.00054 0.047 15.1 0.3 1 23 250 272 250 272 0.97 5 37 4.6e-07 4e-05 24.7 0.1 1 23 278 300 278 300 0.95 6 37 0.67 58 5.3 0.3 3 18 339 354 338 354 0.92 7 37 0.67 58 5.3 0.3 3 18 366 381 365 381 0.92 8 37 0.67 58 5.3 0.3 3 18 393 408 392 408 0.92 9 37 0.67 58 5.3 0.3 3 18 420 435 419 435 0.92 10 37 0.67 58 5.3 0.3 3 18 447 462 446 462 0.92 11 37 0.67 58 5.3 0.3 3 18 474 489 473 489 0.92 12 37 0.67 58 5.3 0.3 3 18 501 516 500 516 0.92 13 37 0.67 58 5.3 0.3 3 18 528 543 527 543 0.92 14 37 0.67 58 5.3 0.3 3 18 555 570 554 570 0.92 15 37 0.67 58 5.3 0.3 3 18 582 597 581 597 0.92 16 37 0.67 58 5.3 0.3 3 18 609 624 608 624 0.92 17 37 0.67 58 5.3 0.3 3 18 636 651 635 651 0.92 18 37 0.67 58 5.3 0.3 3 18 663 678 662 678 0.92 19 37 0.67 58 5.3 0.3 3 18 690 705 689 705 0.92 20 37 0.67 58 5.3 0.3 3 18 717 732 716 732 0.92 21 37 0.67 58 5.3 0.3 3 18 744 759 743 759 0.92 22 37 0.67 58 5.3 0.3 3 18 771 786 770 786 0.92 23 37 0.67 58 5.3 0.3 3 18 798 813 797 813 0.92 24 37 0.67 58 5.3 0.3 3 18 825 840 824 840 0.92 25 37 0.67 58 5.3 0.3 3 18 852 867 851 867 0.92 26 37 0.67 58 5.3 0.3 3 18 879 894 878 894 0.92 27 37 0.67 58 5.3 0.3 3 18 906 921 905 921 0.92 28 37 0.67 58 5.3 0.3 3 18 933 948 932 948 0.92 29 37 0.67 58 5.3 0.3 3 18 960 975 959 975 0.92 30 37 0.67 58 5.3 0.3 3 18 987 1002 986 1002 0.92 31 37 0.67 58 5.3 0.3 3 18 1014 1029 1013 1029 0.92 32 37 0.67 58 5.3 0.3 3 18 1041 1056 1040 1056 0.92 33 37 0.67 58 5.3 0.3 3 18 1068 1083 1067 1083 0.92 34 37 0.67 58 5.3 0.3 3 18 1095 1110 1094 1110 0.92 35 37 0.67 58 5.3 0.3 3 18 1122 1137 1121 1137 0.92 36 37 0.0001 0.009 17.3 2.1 3 23 1149 1169 1148 1169 0.98 37 37 0.013 1.2 10.7 0.2 1 23 1175 1198 1175 1198 0.97
Sequence Information
- Coding Sequence
- ATGGAGGTATCCAGCTTGTGCCGTGGATGCATGAAGGAAGTTGCTTCGTGGGAAAAAGGAAATTTAACCGCGAGAGCCGTAGACATGTTTAGTTTTTGCACTAACTTACGGTTATCGGATGAAGACAATCTACCTCAGCAGTTCTGTTATGACTGTGTCATAAAAATAGAATCCTCCTACACTTTCATCACTGAAGCCCAGAAAGTGCATGTCACTTTAAAGAATATTATATCACGGAGTGACACAAGCATCATCATTGAACCTGATATGACGATAAAAACACATAACCCTGAAATGAAGCTGACTTTACCAGACTACAAAATATGCAGTGTGATCGAGGATACTTCGAGGCTTTCGCAGAAGCAACTTGAAAAACCTGCAGAAAATATTGAGTCTGAAGTCATTGAGAACTTTGAAGAAAATGTGGAAGAAATAATTGAAAGTGAATTACATGTGGAGAGTATTGTGAAGGAGCCAGAAATTGGTGGTAAAAACAGCCTTGTTTGCCTGGTGTGTCGAAAGAGTTTTACTTCAAAGACATGGTTTGCAAAACACATGCAGAAAGAACATATAAAAAAATATGCATGTGCACATTGCTCCAAAAGTTTTTCTCGCCCATCTCAGCTGAGCAGCCATTTGGTATCTCACTCAGAGGAGCGCAACTTTGCTTGCAGTGTTTGTGGAAAGCGCTTCAAACGACGCAAACAATTAGCAGTGCATGCACGAGCTCATGGAGATGTGAGGCCATTTGCGTGTGACCAGTGTCCAGCCAGATTCAAGACAAAGAGCATTCTAAAGAGTCACATGCTAGTCCATAAGAAGGATAAAGCGTTCCTCTGCTACTATTGTGGATGGAGTTTTGCTCAAGCGGGTAACCTGAAGGTGCACATGCGCGTGCACACAGGCGAGAAGCCGCACGCGTGCGCCGCGTGTCCGTACCGCAGTGCGGCGGCGGCCGGCCTGCGGCGCCACGCGCACGCGCACGCGCCGCGCCGCGCCCGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTTCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTTCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTTCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTTCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTTCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTTCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTTCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTTCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTTCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTTCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGTGCGTACTGTCCTACTGACTACCTGCCCCGCCGCCGCCTGCAAGCGCTGCGGGAAACTCTTCCACGACACTAGCAACCTGGCTCGTCACATTCGCAGTCACACGGGCGCTCTGCCCTACCAGTGCCCCGTCTGCGCCAGCGCCTTCTCCGACAGCTGGAAACGGAAGGCGCATCTCATGCGGACGCACAAGCTAGCGCTGCACGACATACCCAGGATGAGGAAGGATGGACGCGTTATGCACTCAAACGTCCAAGTGCACTGA
- Protein Sequence
- MEVSSLCRGCMKEVASWEKGNLTARAVDMFSFCTNLRLSDEDNLPQQFCYDCVIKIESSYTFITEAQKVHVTLKNIISRSDTSIIIEPDMTIKTHNPEMKLTLPDYKICSVIEDTSRLSQKQLEKPAENIESEVIENFEENVEEIIESELHVESIVKEPEIGGKNSLVCLVCRKSFTSKTWFAKHMQKEHIKKYACAHCSKSFSRPSQLSSHLVSHSEERNFACSVCGKRFKRRKQLAVHARAHGDVRPFACDQCPARFKTKSILKSHMLVHKKDKAFLCYYCGWSFAQAGNLKVHMRVHTGEKPHACAACPYRSAAAAGLRRHAHAHAPRRARPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLVRTVLLTTCPAAACKRCGKLFHDTSNLARHIRSHTGALPYQCPVCASAFSDSWKRKAHLMRTHKLALHDIPRMRKDGRVMHSNVQVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -