Lsuf001402.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402574.1:4681235-4683978[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.014 1.2 10.7 0.5 1 22 85 106 85 106 0.96 2 17 3.3 2.8e+02 3.2 0.0 3 23 135 155 134 155 0.93 3 17 0.002 0.18 13.2 0.3 2 23 178 199 177 199 0.97 4 17 0.013 1.1 10.7 0.1 1 23 203 225 203 225 0.95 5 17 0.0044 0.38 12.2 0.2 1 23 230 253 230 253 0.90 6 17 0.025 2.1 9.8 3.8 1 23 259 282 259 282 0.96 7 17 0.0013 0.11 13.9 1.5 1 23 289 312 289 312 0.97 8 17 8.7e-07 7.5e-05 23.9 3.6 1 23 319 341 319 341 0.97 9 17 2.9e-06 0.00025 22.2 2.7 1 23 347 369 347 369 0.98 10 17 0.00068 0.059 14.7 0.3 1 23 449 472 449 472 0.97 11 17 0.0054 0.47 11.9 0.7 2 23 499 520 498 520 0.96 12 17 0.074 6.4 8.3 2.9 1 23 542 564 542 564 0.98 13 17 0.00016 0.014 16.7 0.6 1 21 568 588 568 589 0.94 14 17 0.036 3.1 9.3 0.6 1 23 599 622 599 623 0.95 15 17 0.061 5.2 8.6 2.0 1 23 628 651 628 651 0.89 16 17 0.00021 0.018 16.4 2.1 1 23 658 681 658 681 0.91 17 17 0.008 0.69 11.4 6.5 1 23 690 712 690 712 0.98
Sequence Information
- Coding Sequence
- ATGTCCTATCTTGCCGGCGGGCTACCTACGTTCCTAGTTCTTTCTTTAGGCCAGCCACCACTCGGAAGACGTGGACAAATCTGCAACGAAACTTTAAAAGTTATGGAAGCCAAAATCGTTTGTTTAGAAGTGAAACCTAAATCAAAGTACCAACGGAGCGCCAGAGCTGAAGCACGCATCGCTATCAAGAAAAACGCTACCGCCATCCTGCAATGTTGGACGCTAAGTCCCTTTAGATGGAAAAAGAACAGATTTAAGTGCGCCTACTGCGAAGATAATTTCACTGAGTGTAGCGCTCTCAGAGATCACATCAGGGTTTGCTCTACTCAGCACAGCATTAAAGACATTTATAACAAATTTAAGGAAATGCCGCTCATAAACGTGGATAGTACCGAGGCGATATGTGGTTTTTGCTCCACACCATTCATAGATGTTTCTGTAATGCGCGATCATGTCATTCAACACGGGTTTGAATTCGACACCAAACACCCGGACGGGGTACTTCCATTCTACTTGGACAAAGAATCTTGGAAATGCGTAATATGCGACGAGAAATTTAACAATTTCCTGAAACTGTACGAGCATATGAATATTCATTACCAGCATTACATTTGCGCTACTTGCGGAAAAGGGTACATGACAGCGCCTCGGCTGAGGAAGCATTCTGAAGTGCACATATCGGGTTCGTTTTCGTGCTCCGATTGTGGTAGGGTCTTTACCATGCGCGCCGCAAGAGATTCCCACAAAGCGACCGCACACGCCAAAGGGTCTCGATACGAATGCCCTCACTGTTACATCCGCTTCGATAGCTACTACCATAGGATGACGCACTTAAAAGAGGCACATAGCGAAAAAGAAGTAGTTTACAACTGCGCTCATTGTGATATGTCTTTCAAAACAAGCGGCAAAAGAGCCAGTCACGTTCGTTCTGTCCACTTTCCACCTCAGCATGACTTTAGCTGCTCTTATTGTGGATGGCATTTCAAAACTAACTATGAACTCAAGAGACACATGGTGAGGCACACAGGAGAGAAAAACTTCCATTGCTATGTTTGCGGCAAATCGTTTCCTAGAAATAGGGCTTTAACTACCCATCTTAAGACGCACCAAGACTTAAACTGCAAGTGGTGTTCAGTTAACGAAGCTCTATCGATAGGTGTGGCTAAAAATGGTAGGCCATTGAAAAAGAATGTAAGCGAACGCCAGATGCGTAGGCGTCGACGCGCCAACAACGAGTTGCCTGAAGAATCAGAAAAACGAATCTCGAAGACAATGATGAGACGGAACTCCATCACGCTATTGGAGTGTTCCACAGCGTGGGCTTTTCGATGGTACCGCGGCGCATTTTATTGTGCATACTGTGACATAAAGTTTGTCGATTCCCGACCTTTGAGGGAACATGTTAGAAATAACCATTTAAACGATCCTCCATCTAAAAGAGTTTTCTCGAAACTTAGAGAAAACAATATGGTCAAAGTAGATATAGCTCAATTACAGTGCAGACTTTGCAGCATGAGTCTCAGTAGCTTATCATATCTTAAGACACATTTAGAATCACACGATAAATTTGTAGAAAAAAATTATAGCGATGGAGTGTTGCCTTTCAAACTCGATGATAGCGGATATTTCTGCCAAATGTGTACGTCTTACTTCAACACCTTTAGTAAAATCAACGAGCACATGAACACTCACTATCAGAACTACGTGTGCGATACCTGCGGGAAGGGATTCGTTTCAAAATCAAGATTCAGAGCACACGTCCACACAGGCTACAATAATTCGGAAAGAGAAAATTTTCCTTGTGGAATATGCAATCAAGTACTAACCTCTAAAGCGGCAAGGACGAGCCATCGATCCCGAATCCATCACAAAGGGATCAGATATCGTTGCCCGCGATGTTCCGAAGTCTTTACAACTTACAACGCTAGATCTAACCATTTGGTTCATTTTCACGCCCAACAAAGCATGGTGTATGTATGCAATATTTGCGATAAGACGTTCAGTACGAGTTCGAAGCGCTCGGCGCATTGTAGAATTGCCCACAGCTCACCGTCAAGACAGGAAAGCCATCAATGCTGTTATTGCTCAGTTCATTTTGTAACTAAAGCAAAACTCGTGAGGCATATAAAATTGCATAAAAATTTGAAATAA
- Protein Sequence
- MSYLAGGLPTFLVLSLGQPPLGRRGQICNETLKVMEAKIVCLEVKPKSKYQRSARAEARIAIKKNATAILQCWTLSPFRWKKNRFKCAYCEDNFTECSALRDHIRVCSTQHSIKDIYNKFKEMPLINVDSTEAICGFCSTPFIDVSVMRDHVIQHGFEFDTKHPDGVLPFYLDKESWKCVICDEKFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHISGSFSCSDCGRVFTMRAARDSHKATAHAKGSRYECPHCYIRFDSYYHRMTHLKEAHSEKEVVYNCAHCDMSFKTSGKRASHVRSVHFPPQHDFSCSYCGWHFKTNYELKRHMVRHTGEKNFHCYVCGKSFPRNRALTTHLKTHQDLNCKWCSVNEALSIGVAKNGRPLKKNVSERQMRRRRRANNELPEESEKRISKTMMRRNSITLLECSTAWAFRWYRGAFYCAYCDIKFVDSRPLREHVRNNHLNDPPSKRVFSKLRENNMVKVDIAQLQCRLCSMSLSSLSYLKTHLESHDKFVEKNYSDGVLPFKLDDSGYFCQMCTSYFNTFSKINEHMNTHYQNYVCDTCGKGFVSKSRFRAHVHTGYNNSERENFPCGICNQVLTSKAARTSHRSRIHHKGIRYRCPRCSEVFTTYNARSNHLVHFHAQQSMVYVCNICDKTFSTSSKRSAHCRIAHSSPSRQESHQCCYCSVHFVTKAKLVRHIKLHKNLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377366;
- 90% Identity
- -
- 80% Identity
- -