Lsuf001301.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402574.1:3344126-3348594[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.028 2.4 9.7 0.4 3 23 99 120 97 120 0.93 2 29 1.2 1.1e+02 4.5 4.3 2 23 141 163 140 163 0.95 3 29 0.00017 0.015 16.6 4.5 1 23 168 191 168 191 0.98 4 29 1 87 4.8 4.7 1 23 195 218 195 218 0.95 5 29 1.2 1e+02 4.5 3.7 2 23 221 243 220 243 0.96 6 29 0.23 20 6.8 2.4 2 20 250 268 250 270 0.93 7 29 0.00026 0.023 16.0 4.8 1 23 320 343 320 343 0.97 8 29 0.15 13 7.4 0.1 2 23 372 394 371 394 0.96 9 29 0.0015 0.13 13.7 0.5 1 23 415 438 415 438 0.95 10 29 9.1e-05 0.0078 17.5 2.2 1 23 443 466 443 466 0.95 11 29 0.00011 0.0092 17.3 0.7 1 23 471 494 471 494 0.92 12 29 0.0069 0.6 11.6 2.2 2 23 500 522 499 522 0.94 13 29 0.00043 0.037 15.4 2.2 1 23 526 549 526 549 0.97 14 29 0.015 1.3 10.6 1.5 2 23 556 577 555 577 0.97 15 29 0.00024 0.02 16.2 1.2 1 23 583 605 583 605 0.96 16 29 2.9 2.5e+02 3.3 3.1 1 23 670 692 670 692 0.95 17 29 3.1 2.7e+02 3.2 0.2 3 23 721 742 719 742 0.83 18 29 0.11 9.8 7.8 8.1 1 23 790 813 790 813 0.97 19 29 0.0013 0.11 13.9 3.5 1 23 818 841 818 841 0.91 20 29 0.00067 0.058 14.8 2.7 2 23 844 866 843 866 0.95 21 29 0.17 14 7.2 0.7 2 20 873 891 872 893 0.93 22 29 0.0093 0.8 11.2 1.8 1 23 950 973 950 973 0.97 23 29 0.018 1.6 10.3 0.1 2 23 1048 1070 1047 1070 0.91 24 29 4.6e-05 0.004 18.4 0.6 3 23 1077 1098 1075 1098 0.95 25 29 0.00056 0.048 15.0 3.7 2 23 1103 1125 1102 1125 0.95 26 29 0.023 2 9.9 0.4 1 23 1130 1153 1130 1153 0.97 27 29 0.0033 0.28 12.6 6.2 1 23 1157 1180 1157 1180 0.97 28 29 0.097 8.3 8.0 1.7 3 23 1188 1208 1187 1208 0.96 29 29 1.4e-06 0.00012 23.2 1.5 1 23 1214 1236 1214 1236 0.99
Sequence Information
- Coding Sequence
- ATGACGAAACACGTAATAGAGATGAACCAAGCCTGTGATGCGAAAGCCGAAAAAATGCAAATCACCGCCAATGAAAGCAGGCGAAGGAATCTCCAAACATTGGTCAACAACACCTCTGTGATGCCATTTAAATGGCGTGGCAAATACTTGTGCTATTTCTGTGGAATAGATAAAGAAAAGTACCTGGATTTGAAAGAGCATACGAAAACTCACGTTCCTTGCACAACTGACGAAAGAGCGATGAAGCTTATTAAATGCGGCAACGACACTAAAGTGGACGTCTCTGAAACGAATTGCAAAGTTTGTTCGGAAGAGTTTATTAATATTGACGATTTGCTATCACATTTAAAATTCAAACATAAGCTTTGGTACAGTGACGACGTATCTTTATCACTTGTGACATACCGGCTTGCCGATTTAAAATGCTTGGTTTGCCATGATAGTCTCAAAACGTTCTGTAACCTCGTACGCCATATGAATCAGAGCCACCCTATTAATTGTTTTCAATGTGATATTTGCAACCAAAAGTTCAGTAAAAAGCGAGATTTCACACAACACTTCAGAACATATCACAAGAAAGATTATAAGTGCTCTAAATGCTCTCTCGCGTTTTCGTGTTTCAAAGATTTGATCAAGCATAAAACAAAGGATCATTTGTCCAAGTGCAATCTTTGCTTTCAAACGTTCTCGTCAATTCATAAACGGCTGGGTCACATGAAGAAGGAGCATGAACTAGGCGATGGTGGACAATGTGGGTTCTGCAATAGACAGTTTGATACAAAACACAGTTTCTTAGATCACACTTCTAAATGCAACGTTTCTTCATCTAAAGACGAAAAAACAGTTATAGTTGTTGGAGACGAAGACAAGAATAAAAACGTCCAAGATCTTAGAACCGCTATCGCCTACATCATCAACATGACAACTGCTATGCCTTTTAAGTTCTTTCATAGCAAGTTTCGGTGTTTCTACTGTCCTAAAGAATTCACCTCTTGTAACGATCTCCGAAAACATACGACCACTGAACACCCTATCTGCGAAACTACGTTCCATGCTATGAAACTGCGAGGGAGATCTGATGGTGTCAAAATCAAAGTTGACATATCTTCTCTATACTGCAAAATATGCTTAGTAAGGTTCACTGATTTAGTCGCCGCGATCAACCATTTACAAACCGAACACAAAGCCGTCATAAATAAATACATCGATATGTTCCGACCTTTTAATTTGATTCACGATAAATTTGTCTGTTCATTCTGCGGCCTTGAATTCAGGTATTTTAGTTTACTTTTGCAGCATTTAAATGCTAGTCACTCAGACAATAAATATGTTTGCACATTTTGCGGTAAAACTTTCCCCTCATACACAAATCTACGCGGACATATATCCCATTACCATTCAAGAAGTAGATATAAATGTAGCGATTGCAGTCTTGGATTCTCTAGTAATGACTCCTTGAAGCAGCACTTGGGCAACACGCACGGCAGTAAAGTCATTAAATGTCAGCATTGCTCGGAAAAGTTCATCTCTCGGTATAAAATGATGAAGCATATCGTCAAGGCACATAATGGTGGCCACAAATGCTCCTATTGTGGCGTGGCTTTCATCAAGTACTCGTATATGACTAATCACGTCAGAAGATTGCACCTCAAAGAGAAAAATGTGCAGTGTACTCTCTGTAACCAAACATTTTTTGATACAAACCGTCTTAAAATGCATATGGTGAAACATATCGGCGAGCGCACGTTCCGTTGTGACTACTGCGGGAAGAGGTTCTTAAGAAAAAAGAATCTTAGGGGTCATGTGGCTCTTCATCTTAAAAACGGCAATACGGAACATAAAAGCAACACGTTTACCAGTCATAAAAAGTACTACAGCAAGAATACTTTAATTTCAGATGAATCGCGCGCCCCCCAGATCGACCGAAAAACGTCTGAGCAAAGGAGGAAAAACTTGAAAATATTATTCGATAACACGACAATACTTCCCTTCAGGTGGCGAAGAATGCACATCTGTTTCTATTGTAGGACACCTATACGCGATTACATGGAATTTAGAAAGCACACCAAAGATCACGGCAGGTGCAGCATTAAAAATTCTGCCATGAAAAAAATAAAGGGGAACGGGATAACCCTTAGTGTCGACGTATCAGAAATTGCTTGTAAGCTTTGCGAGCAGCATTTCAAAAGCTTAGAAGTAATTGTAGAGCATTTGATAAACGAACATGGTTTGTTCTATGATAAAAATGTATATAGTGAAATCGTCGAGTACAGGCTGGTTGACTTATGCTGTACGCAATGTGACCTTCAGTTTGATGCTTTCAGGCGTTTGGTCTGTCACGTCAACAAGCATCATCCCCTAAACAATTTTGTCTGTCACCATTGCGAACGCAATTTCAACAAAAAGAGAGATATATTGTACCACATGAATAGCTGTCATCGATTAGGAGGTTACCATTGTAAACAATGTGGTGAAGAATGTAAATCTCGGAGCGAATTGCGAAAACACACAGTACTCGCCCATCTGACACGATGTCACGTCTGCGGCAAAGAGTTCATGAACTTGAATAAGCTGTTTAAACACCTAAAGCTTTTACATCCTAATGACGATAGCAAAACGTGTGGCTATTGCGTAAAAGATTTTCATTCTAATCTCGATCTGAAACAACATCTAGCAAAATGCGAAGTGAGGTTGCTCTCACAAGAAGAGAACAATTCCGTTCCTGTCAATGAAAGCGAAATGGTCGTAACTCCGTCTAGAACGCACGAACAGATAGTGCGTATACGCGAAAACATTCAATGCGTCCTTAACATGTCCACAGCGGTACCATTCAGGTTTAGGGTCACATTCTCCTGTTTCTACTGTTCTATGAAGTACGATGATTACGAATTACTCAAACAGCATACGCAAACGGAACATCCCTTATGCGACATCAAAAGTCAATACATGAAAAAATGTAAAGGGAAGCGCACGTACGTACGAGTCGATATAGCGGGTCTGGCTTGCAAACTGTGTTCTACACCCATGCCCGACTTGGAACACTTTATCGATCACGCCATTACTGAGCATGACGCGAACTACGACAAAACCATTAGTATCGAGACTTGCTTTGAACCTTATCGTCTTGTGAAAGGCAACATCCCATGTCTCGAGTGTCCCAAAGTCTTTCGATACTTGAACACAATGTTAAGGCACTTCAATGCTGAGCACAGCAATAATAACGTGATATGTGACTACTGCGGCCGCGGCTTCCGAACTACAACTAACTTAAAAATGCACCTTCAGAACACACACACCGGGTCGTGCGAATGTAAGATTTGTCACGCCAAGTTCAAGAATCAGTCTGTTCTAGTACGTCACATGGCTAAAAGCCACAACGAAAAGACTTTCAAGTGCGCAAACTGTTCGGAGATGTTCGAATCTGCGTACCAGAGGCAGCTTCACTTGATCAAAGTGCATGGTATCGGCCATAAATGCGAGTATTGCGGTAAAATGTTCACGAAACATTCGTTCATGGACTCTCATGTTAGGCGGACGCATTTGAAGGAAAAGAACGTCGCGTGCTCTGTTTGCAACGACAAGTTCTTCGATAATCACCTGCTCAGGATGCATATGGTGAAACATGACGGCGAGAGAAAGTTTAAGTGCGAACTGTGCGGGAAAGCGTTTTTAAGGCAAAAGAATTTACGCAATCACATGAACACTCACAAGAAATACGGCTTTGTTCAGTGA
- Protein Sequence
- MTKHVIEMNQACDAKAEKMQITANESRRRNLQTLVNNTSVMPFKWRGKYLCYFCGIDKEKYLDLKEHTKTHVPCTTDERAMKLIKCGNDTKVDVSETNCKVCSEEFINIDDLLSHLKFKHKLWYSDDVSLSLVTYRLADLKCLVCHDSLKTFCNLVRHMNQSHPINCFQCDICNQKFSKKRDFTQHFRTYHKKDYKCSKCSLAFSCFKDLIKHKTKDHLSKCNLCFQTFSSIHKRLGHMKKEHELGDGGQCGFCNRQFDTKHSFLDHTSKCNVSSSKDEKTVIVVGDEDKNKNVQDLRTAIAYIINMTTAMPFKFFHSKFRCFYCPKEFTSCNDLRKHTTTEHPICETTFHAMKLRGRSDGVKIKVDISSLYCKICLVRFTDLVAAINHLQTEHKAVINKYIDMFRPFNLIHDKFVCSFCGLEFRYFSLLLQHLNASHSDNKYVCTFCGKTFPSYTNLRGHISHYHSRSRYKCSDCSLGFSSNDSLKQHLGNTHGSKVIKCQHCSEKFISRYKMMKHIVKAHNGGHKCSYCGVAFIKYSYMTNHVRRLHLKEKNVQCTLCNQTFFDTNRLKMHMVKHIGERTFRCDYCGKRFLRKKNLRGHVALHLKNGNTEHKSNTFTSHKKYYSKNTLISDESRAPQIDRKTSEQRRKNLKILFDNTTILPFRWRRMHICFYCRTPIRDYMEFRKHTKDHGRCSIKNSAMKKIKGNGITLSVDVSEIACKLCEQHFKSLEVIVEHLINEHGLFYDKNVYSEIVEYRLVDLCCTQCDLQFDAFRRLVCHVNKHHPLNNFVCHHCERNFNKKRDILYHMNSCHRLGGYHCKQCGEECKSRSELRKHTVLAHLTRCHVCGKEFMNLNKLFKHLKLLHPNDDSKTCGYCVKDFHSNLDLKQHLAKCEVRLLSQEENNSVPVNESEMVVTPSRTHEQIVRIRENIQCVLNMSTAVPFRFRVTFSCFYCSMKYDDYELLKQHTQTEHPLCDIKSQYMKKCKGKRTYVRVDIAGLACKLCSTPMPDLEHFIDHAITEHDANYDKTISIETCFEPYRLVKGNIPCLECPKVFRYLNTMLRHFNAEHSNNNVICDYCGRGFRTTTNLKMHLQNTHTGSCECKICHAKFKNQSVLVRHMAKSHNEKTFKCANCSEMFESAYQRQLHLIKVHGIGHKCEYCGKMFTKHSFMDSHVRRTHLKEKNVACSVCNDKFFDNHLLRMHMVKHDGERKFKCELCGKAFLRQKNLRNHMNTHKKYGFVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -