Lsuf031973.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402561.1:2916542-2942225[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0007 0.06 14.7 0.4 2 23 32 53 31 53 0.94 2 22 0.22 19 6.8 1.4 1 23 57 79 57 79 0.97 3 22 0.00043 0.037 15.4 0.5 1 23 84 107 84 107 0.98 4 22 0.00057 0.049 15.0 0.3 1 23 111 134 111 134 0.94 5 22 0.0095 0.82 11.2 0.2 2 21 152 171 152 176 0.92 6 22 0.00023 0.02 16.3 0.5 3 23 186 207 186 207 0.98 7 22 0.073 6.3 8.4 0.6 2 23 227 249 227 249 0.97 8 22 5.8e-06 0.0005 21.3 0.5 1 23 260 282 260 282 0.99 9 22 5.6e-06 0.00048 21.3 0.4 1 23 288 310 288 310 0.98 10 22 0.074 6.4 8.3 1.2 1 21 316 336 316 337 0.95 11 22 0.00035 0.03 15.7 0.2 5 23 341 359 339 359 0.96 12 22 0.074 6.4 8.3 1.2 1 21 365 385 365 386 0.95 13 22 0.00035 0.03 15.7 0.2 5 23 390 408 388 408 0.96 14 22 0.074 6.4 8.3 1.2 1 21 414 434 414 435 0.95 15 22 0.00035 0.03 15.7 0.2 5 23 439 457 437 457 0.96 16 22 0.074 6.4 8.3 1.2 1 21 463 483 463 484 0.95 17 22 0.00035 0.03 15.7 0.2 5 23 488 506 486 506 0.96 18 22 0.074 6.4 8.3 1.2 1 21 512 532 512 533 0.95 19 22 0.00035 0.03 15.7 0.2 5 23 537 555 535 555 0.96 20 22 0.074 6.4 8.3 1.2 1 21 561 581 561 582 0.95 21 22 0.00035 0.03 15.7 0.2 5 23 586 604 584 604 0.96 22 22 0.028 2.5 9.7 0.3 1 21 610 630 610 631 0.95
Sequence Information
- Coding Sequence
- ATGCGTGTGTGTTACGTGATAGTGTCGGGCAAACAACGGGTGTCGACGCCGTTGACCACAGCCGCACATAATTATTTGAGTGCCGGTGACATCGAGTGCCCGGTGTGCAGGTTCCGGTTCCCGACCAAACGAGCGCTACAGAAGCACGCCACAAACCACGAGAAGAAATACGCCTGCAAGTCCTGTTCTTACATCTCCAAAACTACAACACAAGCAAAGCAGCATCAAAGGTGGCACAAGGGAGTAACATACACTTGCGAATATTGCGACGAAGTCTCTACAAAATGGACATCATACCTCTCGCATGTGCGTATAAAGCATCCGTCGTCGTTCATCTGCTCAGTCTGTGGCTACTCGTTTGTAAGTCAACTCGGACTTACGATGCACAAGACTATGATGCATAAGGATGTCAACGAAACGGAAAAAACGGAGAATAACGAGGAGTCCGGACCATACTGCCAAGAATGCGATGTCAAGTTTGTTTCAATGGAAGCTTACAACCGGCACATGGTTACATCGGTCAAGCATTCGCAGAGTGACGATTTTAGTAAAGGCTGCAGAGTGTGCGGAGCCACGTTCCCGAACCCTGAGGAGTTACGTTTGCATCATAGAAAGGAGCACGCCAGGAAACGGCCCAAGAACTACGGCAAGAAACCGGTCGGACACTCCTGGCCAGCCAAATGTGAACATTGTTCCGAAGTGATCCCAAATGCACGAGAGTACTGGACTCACTTCCGACGAGTGCACCCCGATAAAAACTACCCCATACAGAAGGATTATGTGTGTGACGTTTGCGGGAAGAGCTTCCGGGGTAACGCGTTCTTGATATACCACAAGCGGACGCACAGCGCCGAGCGGCAGTACGCGTGCGCGCAGTGCGGCAAGGCGTTCTACAACCGCACCAACCTCAGCATGCACGCGCGGACGCACTCCGACTCGCGACCCTATCCCTGCGACGTGTGCGCTAAAGCCTTCAAGTGTAAGGGCGCACTCGATAGGCATTACCGGCACAGCACAGCACAGTGCGGCAAGGCGTTCTACAACCGCACCAACCTCAGCATGCACGCGCGGACGCACTCCGACTCGCGACCCTATCCCTGCGACGTGTGCGCTAAAGCCTTCAAGTGTAAGGGCGCACTCGATAGGCATTACCGGCACAGCACAGCACAGTGCGGCAAGGCGTTCTACAACCGCACCAACCTCAGCATGCACGCGCGGACGCACTCCGACTCGCGACCCTATCCCTGCGACGTGTGCGCTAAAGCCTTCAAGTGTAAGGGCGCACTCGATAGGCATTACCGGCACAGCACAGCACAGTGCGGCAAGGCGTTCTACAACCGCACCAACCTCAGCATGCACGCGCGGACGCACTCCGACTCGCGACCCTATCCCTGCGACGTGTGCGCTAAAGCCTTCAAGTGTAAGGGCGCACTCGATAGGCATTACCGGCACAGCACAGCACAGTGCGGCAAGGCGTTCTACAACCGCACCAACCTCAGCATGCACGCGCGGACGCACTCCGACTCGCGACCCTATCCCTGCGACGTGTGCGCTAAAGCCTTCAAGTGTAAGGGCGCACTCGATAGGCATTACCGGCACAGCACAGCACAGTGCGGCAAGGCGTTCTACAACCGCACCAACCTCAGCATGCACGCGCGGACGCACTCCGACTCGCGACCCTATCCCTGCGACGTGTGCGCTAAAGCCTTCAAGTGTAAGGGCGCACTCGATAGGCATTACCGGCACAGCACAGCACAGTGCGGCAAGGCGTTCTACAACCGCACCAACCTCAGCATGCACGCGCGGACGCACTCCGACTCGCGACCCTATCCCTGCGACGTGTGCGCTAAAGCCTTCAAGTGTAAGGGCGCACTCGATAGGCATTACCGGGTAGGTGACACCTAG
- Protein Sequence
- MRVCYVIVSGKQRVSTPLTTAAHNYLSAGDIECPVCRFRFPTKRALQKHATNHEKKYACKSCSYISKTTTQAKQHQRWHKGVTYTCEYCDEVSTKWTSYLSHVRIKHPSSFICSVCGYSFVSQLGLTMHKTMMHKDVNETEKTENNEESGPYCQECDVKFVSMEAYNRHMVTSVKHSQSDDFSKGCRVCGATFPNPEELRLHHRKEHARKRPKNYGKKPVGHSWPAKCEHCSEVIPNAREYWTHFRRVHPDKNYPIQKDYVCDVCGKSFRGNAFLIYHKRTHSAERQYACAQCGKAFYNRTNLSMHARTHSDSRPYPCDVCAKAFKCKGALDRHYRHSTAQCGKAFYNRTNLSMHARTHSDSRPYPCDVCAKAFKCKGALDRHYRHSTAQCGKAFYNRTNLSMHARTHSDSRPYPCDVCAKAFKCKGALDRHYRHSTAQCGKAFYNRTNLSMHARTHSDSRPYPCDVCAKAFKCKGALDRHYRHSTAQCGKAFYNRTNLSMHARTHSDSRPYPCDVCAKAFKCKGALDRHYRHSTAQCGKAFYNRTNLSMHARTHSDSRPYPCDVCAKAFKCKGALDRHYRHSTAQCGKAFYNRTNLSMHARTHSDSRPYPCDVCAKAFKCKGALDRHYRVGDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -