Basic Information

Insect: Lampropteryx suffumata
Gene Symbol: -
Assembly: GCA_948098915.1
Location: OX402569.1:13971791-13979291[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.1e-05 0.0018 19.5 1.5 3 23 160 181 159 181 0.97

2 13 4.3e-06 0.00037 21.7 2.8 2 23 201 222 200 222 0.96

3 13 6.6e-07 5.7e-05 24.2 5.5 1 23 229 251 229 251 0.97

4 13 3.9e-06 0.00034 21.8 1.7 3 23 258 278 257 278 0.98

5 13 7e-07 6e-05 24.2 0.4 1 23 284 306 284 306 0.98

6 13 1.2e-06 0.0001 23.4 1.4 1 23 312 334 312 334 0.98

7 13 0.00029 0.025 15.9 0.1 1 23 339 361 339 361 0.97

8 13 2.5e-06 0.00021 22.4 0.5 1 23 367 389 367 389 0.99

9 13 8.4e-06 0.00072 20.8 2.4 1 23 395 417 395 417 0.96

10 13 2.1e-08 1.8e-06 28.9 1.2 1 23 423 445 423 445 0.98

11 13 1.9e-06 0.00017 22.8 0.7 1 23 451 473 451 473 0.95

12 13 3.1e-05 0.0026 19.0 0.4 1 23 479 501 479 501 0.99

13 13 0.00021 0.018 16.4 5.5 3 23 512 533 511 533 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.1e-05	0.0018	19.5	1.5	3	23	160	181	159	181	0.97
2	13	4.3e-06	0.00037	21.7	2.8	2	23	201	222	200	222	0.96
3	13	6.6e-07	5.7e-05	24.2	5.5	1	23	229	251	229	251	0.97
4	13	3.9e-06	0.00034	21.8	1.7	3	23	258	278	257	278	0.98
5	13	7e-07	6e-05	24.2	0.4	1	23	284	306	284	306	0.98
6	13	1.2e-06	0.0001	23.4	1.4	1	23	312	334	312	334	0.98
7	13	0.00029	0.025	15.9	0.1	1	23	339	361	339	361	0.97
8	13	2.5e-06	0.00021	22.4	0.5	1	23	367	389	367	389	0.99
9	13	8.4e-06	0.00072	20.8	2.4	1	23	395	417	395	417	0.96
10	13	2.1e-08	1.8e-06	28.9	1.2	1	23	423	445	423	445	0.98
11	13	1.9e-06	0.00017	22.8	0.7	1	23	451	473	451	473	0.95
12	13	3.1e-05	0.0026	19.0	0.4	1	23	479	501	479	501	0.99
13	13	0.00021	0.018	16.4	5.5	3	23	512	533	511	533	0.96

Sequence Information

Coding Sequence: ATGTCCACGTTAGTATGCAGAGTATGCCTGTCTGGCAATCTCAGAACAACTTCCATTGCTAACATTGAACTTCTAAATATCTTCGAAAAACTTACGTGTATCAAGGTGAGCTCAGAGCATGGTGCGGAGATGTGTGTGCTATGTCACGCTGTGTTGCTGCGGTGTCACAAGTTCTCCATCATGGCACGTCACTCCGCAGACACATTAGCTGAACTATTTGTAAAGGGCTTTGAGGCAACACAAGAAACGCTGTCAATGCTGAAGATATACCCAACTCAAAGTCTATCCATCAGCTGTGCAGAGTCTATGCACACGGAGACTGTAGACTTTGACTCCAAGCCAGAAGTCTCCGTCAAGGTGGAAGCGACAGACGACGATGACACCGACGCAGCTGAAGACATCTTAAAAGATGCTAAACCTGTCAAAGTGGAAGTTTTCTTCACTGCAAATGAGGATGACCCAGATTTAAAAAACAACTGCGATATTTGCAATAAAACCTTCAACACAACATCAAAGCTGGTGTCACATTACCGACGCATCCACGCCTGCAAGCCAACCAATCTGAGGAAACGGAAAACTCGAACCAAAGATAACCCACTGACCTGTGATATATGTAACAAAACATTCACCTTTAAGTACAACTACGAACGACATAAGAGACTCCATGCGGCCGGGGCGAAGCCTCACACGTGCGACATTTGCCATAAAACCTTTTCTCGTAACAGCAATCTCAGACAGCACAGACTGATACACTCCGTAGAGAAGCCAGCCTGTCCGGAATGCAATGTCACGTTCACATTCAAAAGACATCTGAGAGAGCACATGAGGATCCATGCAGGGAAGAAATCCTACCCGTGCGATCAGTGCGACAAAGTCTTCAACCAAAGCTCGTACCTCGAAGAACACACCAAAATTCACACCGGAGAAAGGCCTTATACATGCGATCAGTGTGGCAAAGCGTTCCCTCACAAGAAGCTCCTCAAGGCTCATTCGCGGATCCACGGGGTCAAATCCTACGCGTGCGATCAGTGCGATAAGGCGTTCCCGATTCGGATCCGTCTGATCCGACACATGATAATGCACACGGAAGAAAAGCCGTACACTTGCGACCGATGTGCCAAAGCGTTCACAACGGGCAGCAATCTCCAGCAACACATGATCACGCACACGGGCGAGAGGCCTCACGCGTGCGACCGCTGCGATAAGACCTTCGCAAGGAAACAGGAGCTTAAGATGCACTACAGAGTTCACACGGGGGAAAAGCCTTACTCATGCTCTGTATGTGGCAAGACCTTCTCGCAAAAGAGCACTCTCAATGTCCACAGGAGAATCCACACCGGAGAGCGTCCGTTCGCGTGCGACATCTGCGGGAAAACGTTCGGGGACAAGTACACGTTCCGGAAGCACATGGTCCTTCACACGGGCGCGCGGCCCTACGTGTGCGGCACGTGTGGCAACGCCTACAGCTCTAACAGTAGTCTCTATGTGCACAAGCGCACGCACGCGACCGGGACTGTCTCGCGACAGGCGGCCTGCGACACGTGCTGCAAAACATTCAGTAATAACAGTCATCTCAAGCGACACATCAGGAATATACACATGAGAGACGCATCTCGCGGCTCGCAGCAGCGGTCTAAAGACGAACAGAGTGCTATTCGTATGTGA
Protein Sequence: MSTLVCRVCLSGNLRTTSIANIELLNIFEKLTCIKVSSEHGAEMCVLCHAVLLRCHKFSIMARHSADTLAELFVKGFEATQETLSMLKIYPTQSLSISCAESMHTETVDFDSKPEVSVKVEATDDDDTDAAEDILKDAKPVKVEVFFTANEDDPDLKNNCDICNKTFNTTSKLVSHYRRIHACKPTNLRKRKTRTKDNPLTCDICNKTFTFKYNYERHKRLHAAGAKPHTCDICHKTFSRNSNLRQHRLIHSVEKPACPECNVTFTFKRHLREHMRIHAGKKSYPCDQCDKVFNQSSYLEEHTKIHTGERPYTCDQCGKAFPHKKLLKAHSRIHGVKSYACDQCDKAFPIRIRLIRHMIMHTEEKPYTCDRCAKAFTTGSNLQQHMITHTGERPHACDRCDKTFARKQELKMHYRVHTGEKPYSCSVCGKTFSQKSTLNVHRRIHTGERPFACDICGKTFGDKYTFRKHMVLHTGARPYVCGTCGNAYSSNSSLYVHKRTHATGTVSRQAACDTCCKTFSNNSHLKRHIRNIHMRDASRGSQQRSKDEQSAIRM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -