Lsuf010404.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402555.1:14402463-14408986[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-07 0.00037 21.1 0.0 1 42 14 56 14 58 0.90 2 2 4.6 2.2e+03 -0.7 0.0 24 34 637 647 637 651 0.86
Sequence Information
- Coding Sequence
- ATGCCCAGGCATTATAAGAAAAAAACTAACCGCACATTTTCTCCTGAGGCACTAAGAAAAGCCATAACAGATGTGCGATCCAAAAAAATAAGCATCAGAATGAGTGCGGCTAAACATGGTGTTAGCAAATCAAGACTTTTTGTTTATTTAAAAAAGACTAAAGGCGAGGTTAACGTTGAATCTGTTGATTTAACAACTAACTTCAAAAAAAGCCAAGTTTTTCCTCCATTCATGGAAGCTGCTTTGGCTGAATATTTAATTAAATGCTTAACAATGTTTCATGGTCTCACACCTAAAGCTACTAGACGCTTAGCTTACGAATATGCAGAGACAAATAATATAAAATATCCGCCAAAATGGAAAGAAACTAAATCTGCAGGACCTGATTGCTGCCGTGCTAAAGATAACCGCCATGATTCCGACGACAGAACATATATTCCTGAGTCTTCAGATTCAGATGAAAACCATATATCCCCTTACTGCAGAGGACGAAAACAACCACCATTAATATTGCAGAATATCAGAGAACAAGCAAATAGTTCAATCATTGCCGTTTTAGAAACAGTACCTGATACCACTTTAAGTATAATGCGAGAACAAGAAGAAAGCGACCCCAAGATGAGAGATCTAACGCCACAAATGAATGACATAAACTCAGACACACGAACACCAACCGCAATCAGCCCCGGAAATAACGTCGAGATAATGTACTTGCAAGATAATACAACAGAAACTGTTCATACAATACACGAATCTACAGAAACAGAAGGGAAGGGATTAACTAAATATGACTCACGCAAAGAGTACGAAGAAGATAGGTTAAAGGCGAAGGATAACAAAGAAGCAATTTACTATTCCGCTGATATTCAAAAGGTTATCATGTTACCTAGGATGGACCAATTTAAAACTGCCATTTTCTGCCCGCGGATCATCGCCTTTAACGAAATCTTCGTCCCTCTTGGTCCAGCAACAGCAGAAAATTTGCCATATGCTGTTTTATGGAATGAAACCATATCCGGCCGTAGTCAAGACTTGATTTCTACCTTTAAGGTATTTCTTGAACACAAAAGAGACGTGAAACACATAGTGCTTTGGCTTGACAACTGCTCTGCCCAGAATAAGAACTGGGCACTGCTATGCTTTCTGGTCGACATTATTAACAGTGGAAATATTGCAGCTGAGAGCATAACGCTAAAATTCTTCGAACCAGGACATACGTTTATGTCAGCAGATAGTTTCCACCATCAGGTGGAACTATCTTTGCAAAGATCAGGAAAAGTTTACGACTTTAATGATTTTGTGGACTCGGTCCAGAAGAGCAATAAAAAGAAAAACATTGTAAAGGTTATGGAAATAACAGATTTCTTCTCTTATGAAGACATCTACTATTGCTACTATTGCACAGTGCAACGTGGTCCAAAAGTCATTGCTCAAAAAGGGCAACACCAAGTAGGACAAGTGACCTCGCGAGAAGGAGGAGAGCTGGTAACACAGGTAGGAATCATAAGTGCAGCTGGTCATGCCTTACGACCGATTTGGATATTTCTTCGTCACCGCTTTGACAAAAGGAAAATGATGCAAGGTATTCCAGATACTGCTGGTCTTGGTTTGGTTTACCCTTCTGGCTGGATGACAAGTGAGAATTTTTTGAAGGTGTTGGAATATTTTACTCAAAATGTGCGTTGTTCTATAGAAAACAAGGTCTTGTTAATCATGGACAACCATGAATCCCATTTATCAGTGGATGGATTAAATTTCTGTAAAACAAATGGGATCATCATACTTACCCTGCCACCACACACGTCAAATAAGCTGCAACCACTGGATCGAACTGTGTTTGGCCCATTTAAGACTTTTTACAACAGTGGTCTGGATTCATGGATGTTAGCACACCCTGGGCAAACTGTTAGCATTTATGACATCCCACAAATTAGTCTGCAAGCTTGGGATAGAGCTGCCAATCCTATGAATGTAAAATCTGGATTCAGATGTACAGGTATTTGGCCCTTTGATAGAAATATATTTACGGATGTAGATTTCTTATCATCCTATGTGACAGATCGACCGGAGACTGATCAATCTAATGTTCGTGCACAATCTCAAAACAGTGATGATGAATGTGTCTCACCTTCAATGATTGGACAACTGTTTGGATTAGATAAGTTAAATGATGATGGCTATTCCTACAGTTTACAGGACCTCATCAAAAACCCCATCAATTTCCTCAGGTCATAG
- Protein Sequence
- MPRHYKKKTNRTFSPEALRKAITDVRSKKISIRMSAAKHGVSKSRLFVYLKKTKGEVNVESVDLTTNFKKSQVFPPFMEAALAEYLIKCLTMFHGLTPKATRRLAYEYAETNNIKYPPKWKETKSAGPDCCRAKDNRHDSDDRTYIPESSDSDENHISPYCRGRKQPPLILQNIREQANSSIIAVLETVPDTTLSIMREQEESDPKMRDLTPQMNDINSDTRTPTAISPGNNVEIMYLQDNTTETVHTIHESTETEGKGLTKYDSRKEYEEDRLKAKDNKEAIYYSADIQKVIMLPRMDQFKTAIFCPRIIAFNEIFVPLGPATAENLPYAVLWNETISGRSQDLISTFKVFLEHKRDVKHIVLWLDNCSAQNKNWALLCFLVDIINSGNIAAESITLKFFEPGHTFMSADSFHHQVELSLQRSGKVYDFNDFVDSVQKSNKKKNIVKVMEITDFFSYEDIYYCYYCTVQRGPKVIAQKGQHQVGQVTSREGGELVTQVGIISAAGHALRPIWIFLRHRFDKRKMMQGIPDTAGLGLVYPSGWMTSENFLKVLEYFTQNVRCSIENKVLLIMDNHESHLSVDGLNFCKTNGIIILTLPPHTSNKLQPLDRTVFGPFKTFYNSGLDSWMLAHPGQTVSIYDIPQISLQAWDRAANPMNVKSGFRCTGIWPFDRNIFTDVDFLSSYVTDRPETDQSNVRAQSQNSDDECVSPSMIGQLFGLDKLNDDGYSYSLQDLIKNPINFLRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -