Lcur015878.1
Basic Information
- Insect
- Lamproptera curius
- Gene Symbol
- -
- Assembly
- GCA_029286875.1
- Location
- JAGSMT010000057.1:547664-559062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.8 1.2e+03 1.5 0.3 3 8 197 202 195 205 0.87 2 13 0.06 9.5 8.1 0.6 1 21 216 236 216 237 0.93 3 13 0.0016 0.25 13.1 1.3 2 23 258 280 257 280 0.94 4 13 0.028 4.5 9.2 0.5 2 20 318 336 317 338 0.87 5 13 1 1.6e+02 4.2 0.1 3 23 374 396 373 396 0.86 6 13 0.017 2.8 9.8 0.2 2 23 723 744 722 744 0.95 7 13 0.57 90 5.1 1.1 2 23 760 780 760 780 0.89 8 13 7 1.1e+03 1.6 0.1 6 23 826 843 825 843 0.92 9 13 3.5e-07 5.5e-05 24.6 0.4 1 23 849 871 849 871 0.98 10 13 0.00068 0.11 14.2 2.9 1 23 876 898 876 898 0.97 11 13 0.012 2 10.3 1.5 2 23 904 926 904 926 0.97 12 13 1.4 2.2e+02 3.8 1.5 1 19 933 951 933 952 0.83 13 13 0.12 19 7.2 6.5 3 23 965 986 964 986 0.95
Sequence Information
- Coding Sequence
- ATGGATACGGAGACCGTAAAGGACAAAACAAAGCTCAACAACCAGTTTGATATTGTTACAGTACCCAATAATTCTGTACAGGGAGGGTCTACAGATGAAAGCCCATGTAAAATTGAGAATCATGAATATTTGCTAAGGAAATTACCTGACAATGTATGGATGGATGACAAACACACCCAGGTAGAGCAGTATACTATCACAACGGAATGCATTTTGAGAGCGATAGAGATTCAGTCCAAAAAGAACACCAGTGAAATAGATAAGTACCTTGATGTAGCCGCTAGAAATGGGCAGGGTCAGTTCAATACACCCAAGTTGTCTTCATTACAACAgctaattaacaaaacaataatactgTGGGCAGATTGGCAAAAGATATGCCCCAGATTTAGAGGTACACCACTGCTGTACAAATGCTACATCTGCTCAATAGGCTGGTGGTCACTTTATCCATTCCAAGAGCACATTACGAACCACCAAAAGATCTCTGCAATATTCCTACGTTTAGAGCTTGATAATCACGAGTTATCGATAGTCGCTACCAGAGTGTACGATAAAACACGTAAAGCTGTCAGTGTTCAGTCTAACTGTCCGAAGTGCGGCAAGAATGCAAATTTTCACTGTATCGGCAATGGACTCTCGAAGTACAAATGCCCTGGGTGCGGTGTCATTCTTGAGAACTGCCACAAGTTGGTAGACCACAAGAACAGGTGCACGCAGTACATAAAACTGAAGCAGGACAAGTATGGAGTTGGTCCTGACAAGGGGGTGACTTGCCCAATATGTGGCCAACATTATGTCAAACAGTCGTGTCTTGACTCTCATATCTCAAATGTACATTGCATTCGTTCAGATGAGCCTACAAGTCTGAATGTCAGGGTATGCAACGTGTGCCAATGCAAATTCCACAATTACAAGTTCCACGACTGCTCAGCCAAGAGCAAAATGATAAAGTGTAACCACTGCTCCAAGAAGTTTATAAACAGTGCCTTAAAGGATATGCATATGAGTGGATCTAACAATAAGATCGAATGTAGAGTGTGCAATAAGATCTTTTACCAGTGTTGTGCTGCGGAGCATTATGTTAAGCACACAAATAACTACGTTCTTCTATACTGGTGTGGTAAATGCGAAGACAGAATAGTCTTCAACGATGTTTCATCCTACATGCAACATATGAAGGACCATGATTCCGTACAGAGGAGGAGATGGGGCAACTgtatgCTCGTACCAACGATTTGCATGGACGCCTCAATGGTATCAAAGAAAGAAACACTTAAGATACCAAATAAAAAACTCGGATATTTTATGCTCGGAAAAGATGCGTTCAAGGATAATGCGTTAAATGAAATGTCGCCTGAGGGCGAAAGCGAGGAATTAGCTGATGACGTCGTGGTACTTCATGACGACGACAAAGTTAACAACGACAATGATGACCAAATCGAAGGAGATACTGAAAGTTCCCAAGATGTCGATTTGTGCGAGTTGCAAGCGCAACTAGACGCTGAAATAGAAAAGGAATTAGAAATGGAAAAAACTATATCTGAAATgtttaagaaatcaaaaatgtataacttaTTTGTCGAGAGGGTGATGAGGGGGAACAGAGGTGAAGACGAAGAGTTTTTTAAAGAGCAGGAGAGTTCGATCCAGAAGATTTACAATGAGAGAGACTGTTTAAAAGGTGCTGCTATAGACAGCGAGGAGCCAGTGACGAAAGTAGAAGAAAAAGGAGATCATCCTGAGGTGTCggaggatgatgatgaagataactGCGCGCAAGTAGACGAACCGATTGGTAATGAAGAACAATTTACAATCGTCAAAGAGGAATCTGATAAAGAAGTTGTTATAGAATTTAATTCTAACGAAGAGAATAATCCACCGAGTAACGAAAGCTGCATTAAAGAAGAGGTAGACAATATCGATCTAGATGCCAACGTAGAATTGAATTTTCACAACAATGCAAACATCAAAGAAGAAGTCACAGTCAAAGTGGAGATAAATCTGGAGCCCTTCGGCTTGAATGCCGATTGTGAAGCAGATAAATCGGCCGGCGACAAAACTAAAAGATTTGAACCTTTAAGTGGTCTTATAAGATCAGCCAAAATGTCAACTGAGGTTAGGTTGTACATTCAGCGTATGATGTCACAGAAGAGCGATCTGACGTGTCCCCGATGCGATAAACATGTCGACACAGTCGAAAATATGGAGGCTCACTTGGCCTACCATCTTAATACGTCGTTCAAGAGAATCACGGACAAAAGAGCGTTGCGCAAATGTTCCGAGTGTGGAAAAAAAGTTAAGCCCGTGCAGAAATTCCGGCATTGGTTGCGCCATTGTCAAGGCGTAAGCGTTCCGGTGATGAAGAGAAGTAAAAAATTGGGTCTCTCTGATCCGGAAAACGCCGACGATGGCAATAATGACTTCCCAGAGGCATCGATGGATCCGGAAGTGGTGACTGAAATAATTGTCTGCTCGTCGAATTTCTCCAAGGTGGAGTTGTGGAAAGTCCACGTCAGGAAGCACTCGAAGTTGAAGATCTACAAGTGTCCAATTTGCCCAAAGACCTTCGGTGACACAAGCAATCTAGCGAAACATACAAAATTACACAATGACAACACGTTCATTTGTGACCGCTGTAAAAAGAAGTTTCTTACCAAAAAGAACTTAATACGGCATTTAAAGCTCCACAAGGATGTCAAACCCACCTGTAGCGTTTGCGGTAACTCCTACCTGACTGAGAATCACCTGAAGGTCCACATCCGCTCAAGGCACCCGGAGGACCCCAGGATCTACCCCTGCAGGATGTGCACGAAGAGGTTCGCCAAGGTCAAGGAGAGGTGCGACCACCTGTGGCTCGTCCACAAGGAGCGCAGCCGCTTGGCCGACTGTCCGGTGTGCAAGAAGCAGTTCAGAAAGCATTGCCATGTCAAGCAGCATCTGATGGAGGACCACGGATGCTCGCGGTCCGTCCTAAAGTTTTCTCGCATACACGCTGATGTACCGGTAATATGA
- Protein Sequence
- MDTETVKDKTKLNNQFDIVTVPNNSVQGGSTDESPCKIENHEYLLRKLPDNVWMDDKHTQVEQYTITTECILRAIEIQSKKNTSEIDKYLDVAARNGQGQFNTPKLSSLQQLINKTIILWADWQKICPRFRGTPLLYKCYICSIGWWSLYPFQEHITNHQKISAIFLRLELDNHELSIVATRVYDKTRKAVSVQSNCPKCGKNANFHCIGNGLSKYKCPGCGVILENCHKLVDHKNRCTQYIKLKQDKYGVGPDKGVTCPICGQHYVKQSCLDSHISNVHCIRSDEPTSLNVRVCNVCQCKFHNYKFHDCSAKSKMIKCNHCSKKFINSALKDMHMSGSNNKIECRVCNKIFYQCCAAEHYVKHTNNYVLLYWCGKCEDRIVFNDVSSYMQHMKDHDSVQRRRWGNCMLVPTICMDASMVSKKETLKIPNKKLGYFMLGKDAFKDNALNEMSPEGESEELADDVVVLHDDDKVNNDNDDQIEGDTESSQDVDLCELQAQLDAEIEKELEMEKTISEMFKKSKMYNLFVERVMRGNRGEDEEFFKEQESSIQKIYNERDCLKGAAIDSEEPVTKVEEKGDHPEVSEDDDEDNCAQVDEPIGNEEQFTIVKEESDKEVVIEFNSNEENNPPSNESCIKEEVDNIDLDANVELNFHNNANIKEEVTVKVEINLEPFGLNADCEADKSAGDKTKRFEPLSGLIRSAKMSTEVRLYIQRMMSQKSDLTCPRCDKHVDTVENMEAHLAYHLNTSFKRITDKRALRKCSECGKKVKPVQKFRHWLRHCQGVSVPVMKRSKKLGLSDPENADDGNNDFPEASMDPEVVTEIIVCSSNFSKVELWKVHVRKHSKLKIYKCPICPKTFGDTSNLAKHTKLHNDNTFICDRCKKKFLTKKNLIRHLKLHKDVKPTCSVCGNSYLTENHLKVHIRSRHPEDPRIYPCRMCTKRFAKVKERCDHLWLVHKERSRLADCPVCKKQFRKHCHVKQHLMEDHGCSRSVLKFSRIHADVPVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -