Lcur015305.1
Basic Information
- Insect
- Lamproptera curius
- Gene Symbol
- -
- Assembly
- GCA_029286875.1
- Location
- JAGSMT010000053.1:1232329-1247635[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.9 3e+02 3.4 0.7 1 10 432 441 432 454 0.83 2 11 0.033 5.2 9.0 0.9 1 23 461 484 461 484 0.93 3 11 0.3 48 5.9 0.2 1 23 488 510 488 510 0.94 4 11 0.037 5.9 8.8 1.0 1 23 515 538 515 538 0.98 5 11 0.1 16 7.4 0.6 1 13 542 554 542 555 0.91 6 11 7.4 1.2e+03 1.5 0.1 2 20 578 596 578 598 0.83 7 11 0.13 20 7.1 0.3 2 23 654 676 653 676 0.96 8 11 0.0085 1.4 10.8 0.5 2 20 692 710 691 713 0.92 9 11 0.00033 0.052 15.2 1.3 1 18 719 736 719 736 0.94 10 11 0.045 7.2 8.5 0.4 5 23 739 757 738 757 0.94 11 11 1.5e-05 0.0024 19.5 3.5 1 23 763 786 763 786 0.94
Sequence Information
- Coding Sequence
- atgaagtGCAGCGTTCAGAATTGTAACAGTGATACGAAGCGGACATCGAAAGATCATGGACTCACTTTCCATTTATTCCCCAAGCAGATGGACCTGCGCAATGCCTGGATCGAGGCCCTAGGGCTCtccgagtggcagcctcgtgaTAAGAGCACGGTGTGCTCCGAGCACTTCAGCGATGACGACTTCTATCATACTAAATGCGGGATGAGGAAGGTCAAGAGCGGTGCGGTCCCTATCATCAGTCAGGACGCTTGCGATGATCTGGACGCGCCAGCCACTATGAAGGCGTGCAGGATTTGTCTGGCGATGGACACAAAGCTATACAGTATTACAGATTTCAAACTTAACGAGCGGTACGAGCAGATCACTGGGTTGAATATTGGTGATGACGACAGACTTCCAAAGATGCTGTGCTGGGAATGCTCTCAACGTTTACATTCCTGCCATCGCTTTAGAAGCCGAGCTTTGCTCAGTCAGCGACTAATGGTGGCTTCACTCGATTCGGATAGATTTATTACATTGCGCGACGTAAAATCGATCGACCGCCACTCAAACGGGCTTCAAAGCACCCTCACACTTAGACTTAACGAAGCAAACCGTAGCGATGTACACATAAGGGAACCCGACGCCAACCTCAAGGTTGAAATATGCTTTGATGACGTCATCAATGACGTCACACACGATGCATCACGTGAATTGACACATAGCGTGGCCCATGACGTCACGGATGACGTCATGGATGTGGATCACGCGATGGATGACGTGGACGCACTCCCAGAAGAGGGTGTGGATGTAAACTGTGACGTTACTCCAGAAGATTCCAGAAGGCAGCCCAAAGAAGAGCCCGTCGCGTTCGCGTTGGCCGACATAAAGCAGGAGAGCAACGTAATCTTCTTCAACGAGTTCGACCAGTACGACAGCGACGATGACAAGAAACTTAGCGAAGTCACTAAGAAGgaccaagacaacgcgccgaAGGACAAGCTGAGGAAGAAACGGCCGAAACTGGAGAAGCTGAAGAAGGTGAGGAAGTTGGACAAGCTGGATAAGCTGGCCAAGCGTGAGAAACTGAGGAATGTCGATATAATAAAGCAGCTGGATAGACAGTCAAGGATAAAGAACAAGGATGTGGTTTCTACGACGGACAGGTTCAAAGAGGCCAACGTGAAACGTCGGAAGACCTGCGACACAATAGACGAGACGCTCTTCACAATAAGCGCGCTTACTTACGACGAACAAATAGACGAGATCAATAAAAGACAGGAGACCACAGCGTACAAGAACGCGCCGTACAAGTGCACGATATGCTTCCGCGGATTCCAGATAAAAGACAGACACGACGCGCATATCGTCAGGCACAGTGAGCAATGCGGTGCATTCGAGTGTTTCATCTGTAAAACTAGGCTCAAGACCGGCAGAGCGTTGAGGAAGCATTTAACCGCTCAGCACACTGAGAAGTTCACCTGCAAAGGGTGTCCATTCGAAACTAGGAATAGGGGGGTGGCCAGAGAGCACGAAAGATGGCACGCCGGTACCAAATACCAGTGCCCGCACTGCGCCAGCGAATTTGACAAACTGACCACGTACATGGGCCATATAAGGATAAAGCACGCGTCCGACTTCGTCTGCGAGCTCTGCGGTTACACATTTGTCAGCAAGAAGGTATCGACGTGCACAAAAAGAAGAAGCATAGAGCTACACGACAAGAATATTACCCTCGAAGGTCCATACTGCGACATGTGCGAGGTGCGTTTTATATCAGAGGAGGCCCATTCCCGCCACCTCCAGTTGTCATCGAGGCACAGCAGTGAAGACGATCCGAATCGAATCCGCAACGACTCGCAGAGCATGAACTGCGAGCGATCTGGTCGCACCGTGCGCAGGATCGAGCGAAGGCCCACTGTGCATTTGAAGGGTTTAGCCGAGAGGGAGCAGGCGGCGGATAACGGCCCGGTCTCGTGTGAACAGTGCGGCATCCAGCTGCGCGACTTGAGGCTGTACGCGCAGCACTTCCGGCGTATGCACCCGGACAAGAATCGAACCAAATACCCCGCGATGAAGACGCCCTGCATGTGCGAGCAGTGCGGACGCATTTTCCAGAGCATGGCCCTCCTCAAGGACCACATGTGGGTGCACACGGGCGAGAAGCGCTTCCAGTGCAACAGCTGCGAGAAGAGCTTCACGCAGAAGAGCAACCTGCTACGACTGCCGCTGTGCGGCAAGCAGTTCGCCTTCTTCAACAACCGACGGAGGCACATGTTTATCCACACGGGTTTGAAGCCGTACCGCTGCGACACTTGCGACAAGTGCTTCACGACAGCGGGCGAGCTGAGGGCCCACTTCCAGCACGTCCACCTGAAGAAACCCTGGCCAAAGAGGGCGAGGGCTAGGAGGGACTGGAGCAAGCCTCAACCTTAG
- Protein Sequence
- MKCSVQNCNSDTKRTSKDHGLTFHLFPKQMDLRNAWIEALGLSEWQPRDKSTVCSEHFSDDDFYHTKCGMRKVKSGAVPIISQDACDDLDAPATMKACRICLAMDTKLYSITDFKLNERYEQITGLNIGDDDRLPKMLCWECSQRLHSCHRFRSRALLSQRLMVASLDSDRFITLRDVKSIDRHSNGLQSTLTLRLNEANRSDVHIREPDANLKVEICFDDVINDVTHDASRELTHSVAHDVTDDVMDVDHAMDDVDALPEEGVDVNCDVTPEDSRRQPKEEPVAFALADIKQESNVIFFNEFDQYDSDDDKKLSEVTKKDQDNAPKDKLRKKRPKLEKLKKVRKLDKLDKLAKREKLRNVDIIKQLDRQSRIKNKDVVSTTDRFKEANVKRRKTCDTIDETLFTISALTYDEQIDEINKRQETTAYKNAPYKCTICFRGFQIKDRHDAHIVRHSEQCGAFECFICKTRLKTGRALRKHLTAQHTEKFTCKGCPFETRNRGVAREHERWHAGTKYQCPHCASEFDKLTTYMGHIRIKHASDFVCELCGYTFVSKKVSTCTKRRSIELHDKNITLEGPYCDMCEVRFISEEAHSRHLQLSSRHSSEDDPNRIRNDSQSMNCERSGRTVRRIERRPTVHLKGLAEREQAADNGPVSCEQCGIQLRDLRLYAQHFRRMHPDKNRTKYPAMKTPCMCEQCGRIFQSMALLKDHMWVHTGEKRFQCNSCEKSFTQKSNLLRLPLCGKQFAFFNNRRRHMFIHTGLKPYRCDTCDKCFTTAGELRAHFQHVHLKKPWPKRARARRDWSKPQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00855936;
- 90% Identity
- iTF_00855936;
- 80% Identity
- iTF_00855936;