Lcur019634.1
Basic Information
- Insect
- Lamproptera curius
- Gene Symbol
- -
- Assembly
- GCA_029286875.1
- Location
- JAGSMT010000081.1:1484984-1497427[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.22 34 6.4 0.2 3 23 115 135 113 135 0.96 2 15 0.25 40 6.1 0.1 2 23 139 161 138 161 0.93 3 15 0.26 41 6.1 0.8 3 23 386 407 385 407 0.96 4 15 0.0031 0.49 12.2 0.1 1 21 415 435 415 436 0.95 5 15 0.0067 1.1 11.1 0.5 2 23 446 467 445 467 0.94 6 15 1.3 2e+02 4.0 0.5 1 23 483 506 483 506 0.77 7 15 0.59 94 5.0 0.6 1 13 515 527 515 528 0.93 8 15 0.46 72 5.3 0.3 3 15 597 609 595 618 0.80 9 15 1.9e-05 0.003 19.1 1.1 1 23 652 674 652 674 0.97 10 15 7.7e-06 0.0012 20.4 1.3 1 23 681 703 681 703 0.98 11 15 6.7e-05 0.011 17.4 2.3 1 23 708 730 708 730 0.96 12 15 0.00016 0.025 16.2 1.6 1 23 736 758 736 758 0.98 13 15 1.8e-06 0.00029 22.3 1.5 1 23 764 786 764 786 0.97 14 15 0.0042 0.67 11.7 2.8 1 23 832 854 832 854 0.98 15 15 0.34 54 5.7 6.4 1 23 860 883 860 883 0.96
Sequence Information
- Coding Sequence
- ATGGCATCTGAGGATTCTGATGATGAGCCTCTGTCAGTCTTGGCAAATGCTAAAAAGTTAAACCCCGAAAAGTTTGTGGAACCAGTTTCCGATGGAACGAAAACCTCGACTAGAAAGAGAAAAAGGAAATCATTGCATCCTAAGAAATTAGGCGTACCTGTTAAAGTAAGGAAGCAAAGAACGTTAGCTCCTCCGCCTGTAGTTGAAAGGCCAGCGGATGTTTGGCTCtacttaaaagatttaaaccCTTCCGGACCCTATAGTTGTTTGTTATGCTCCGATTGGTTTATTAATCGTACCAAAATGATAATGCACTATGTGCTAAATCATAAGAAGGATTTTTGCGGTATCTGTAGgTACTTTGTAGCAGACAGACAATCATGGCAGGCCCACATAAAATTCCACATACCATGGCCATGCTCCCAGTGCATCGCGAATTTTCCTACTCAGATGACACTACGCCAACATCTGAGTAGCGCCCACAACCTGGTCCACTGCCGCCTCTGCCACTTCAGATTGCCAGATGACGAGCAGTACCACTCTCACCTCTTCCAAAAGCATAACGTGACAAGCGTCGTTAGCAAAGACGAGGAGGTCCTGTGGGATTTCGACTACGAGGGCACAACAAAGTTCCTATGCCTGCTATGTTCCAAGCCGAACAACCTCAGCTCGACATTCTTCGCCCACTATATGGGCTACCACCACTTCACGATCAAGTGCCTCACCAGTTTGATATCTGGCCGCGACCTGCCGTTCACGGTGAACGGCGCTGACGTCAGCGAACATTTCATCGACGGCCAGCTCCAGGGGAAGGAGCGTTACGGTTACCTAGACCTGGACAAGACACCCGTGGAAGCGCCGAACTCCGCCGACGGTTCATGCGAGCCAACGGAATTTCTAAAGACGGAGATAAAGCAGGAAGCGACCGACGACAATCGCGACCACAAAACGGTGAAATCTAAAGTGGAGGAACTGCACAAGGATTACAAAGGCGACGAGGACTTCGACGTGACGCTGACGGAGCTGATAGTATTGGAGAAGTGCTATTTCGATTACGTGACTAAAACTATAAGCGACATTAACTGTAATCAGATGCCCGAAAACTCGTTGATCGAGTACCAAGAGGGCAAATCGGACATCATAATGGACGTCGATTGCCCGCTGTGCAAATCTAAGTATGAGAACACGCAGGCGTTCACGATGCACATGAGCAAGATGCATTGCGTGAAGCTTGTCCCGCTGTATTCCTGTAGGGTGTGCGCAACAACTTTCGACAACCAGACCGAGTTGGAATCCCACATCTCGATAGAATTGGGCAACTTTGAAGATCTATGGATCTGTCAGTTCTGTGACAAGGAGTTCGACAACCGGGAGGCGACAAGGAAGCACCTCACTGAGCATTGGGAGGATATGGAGTACGATAACTGCTTTAGTCCACACCTCGGCTTCAAGTGTAAATACTGTCCGACGTTGTTCTGGAACGAAACCGACCGGGAGTTGCACCAAGTTAGGGCGCATTTCGCCTTGTATAAAGAACAGTTCTATAAATGCGAGAGCTGCTCGGAAGTGTTCAGCGATAAgGTTGTGGTTCATCCATCACCATTTGGAAAAGCACTTCGCCAACAAGATGACGACGTACCTACTCAAGTGCTGTTTGTGCTGCATCCGAGGAAGGTCTATTGCTCTTTAGACGCTTGTCAGTACAAGCCCTTGAGTCACAGGAAGTCCTTCAAGTTACACGTCAagACGATCCACAATCCCAACGCCCGCGCCGAGAAGGTGGTGAACTGCACGGTTTGCGGGAGAGAGTTCGCAAGTTCGCGCGCGTGCGGCGCCCACGTGGCGCAGGTCCACGGGCCCGGCAAGTTCAAGTGTAAATTGTGCAGGGACGTTCTCCATACGTTGGACGAGAGAAAGTTACATTACCTGCTCTGCCACCCAGGCAGGCATCCGTACGAATGCGTGGATTGCGGGAAATCCTTCCAGTACAAATCGTCCCTGTACATGCACAGGCAGGAGCATGCGCCCAACAAACAGAGTTTTACTTGCTCTTACTGCGGCAAGGTGTTCATGAAGAAAGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCCCGGCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCGAACATGCTGCGCCACGAGCGCCGGCACACGGGCGAGCGGCCCTACGCCTGCCCGCACTGCCCGCGCACCTTCGCCGACAAGGGCGCGTGCAACTCGCACGTCAGaacACATTCCAAGGAGACGTCATTCGCGTGCCTGTATTGCGGTCAGACGTTCGTTCAGAAGTCGAAACTCACTTACCACATAAGAAAGCACACCGGGGAAATGCTCCAACTTAGAATAATAGAAAATCGCCTCTTTACCGGTGGAATGTCCTCTCCCGCAGACCGCAAGTACCAGGACGAGCGCTACATGCTGCGCCACCTGCGCACGAGCCACACGCGCGCGCAGCACACGTGCCCGCTCTGCCACAAGCTGCTCACGAGCGCCGCCGGCCTCAGGCACCACGTGCTCACGCACAGCGCCGTCAACCTGTTCCACTGTAAATGCTGCCCAAAGTCGTACGCGATCAAGCGTACGTTGTTAAAGCACCTGCGAAGGCGTCACGGCCTCAATGGCACCGAGATCAACATCAAAGACTTCTTCAGAAAACTGGACCCTCGCGAGTGTCAGCTGGGCCTGGACGAGACGATGATCAGCATCTTTGGACCTCCGAAGAAGTTAGCAGACATCATGCTAAGTGACTATGCGGTATTTGGGAGCAATCTGATAAAGGAAACTGGTGAAGAAACGGACGATTCTGGAGAGGAAGAGGCAGAGAAAGAGTATAAGTACTTTGACTCCATTGAAGCGGCAGAGAAGAGAGAAATGGATATTGAGAATATCGAGCCTTATGATGAGAATGATACAAGTTAA
- Protein Sequence
- MASEDSDDEPLSVLANAKKLNPEKFVEPVSDGTKTSTRKRKRKSLHPKKLGVPVKVRKQRTLAPPPVVERPADVWLYLKDLNPSGPYSCLLCSDWFINRTKMIMHYVLNHKKDFCGICRYFVADRQSWQAHIKFHIPWPCSQCIANFPTQMTLRQHLSSAHNLVHCRLCHFRLPDDEQYHSHLFQKHNVTSVVSKDEEVLWDFDYEGTTKFLCLLCSKPNNLSSTFFAHYMGYHHFTIKCLTSLISGRDLPFTVNGADVSEHFIDGQLQGKERYGYLDLDKTPVEAPNSADGSCEPTEFLKTEIKQEATDDNRDHKTVKSKVEELHKDYKGDEDFDVTLTELIVLEKCYFDYVTKTISDINCNQMPENSLIEYQEGKSDIIMDVDCPLCKSKYENTQAFTMHMSKMHCVKLVPLYSCRVCATTFDNQTELESHISIELGNFEDLWICQFCDKEFDNREATRKHLTEHWEDMEYDNCFSPHLGFKCKYCPTLFWNETDRELHQVRAHFALYKEQFYKCESCSEVFSDKVVVHPSPFGKALRQQDDDVPTQVLFVLHPRKVYCSLDACQYKPLSHRKSFKLHVKTIHNPNARAEKVVNCTVCGREFASSRACGAHVAQVHGPGKFKCKLCRDVLHTLDERKLHYLLCHPGRHPYECVDCGKSFQYKSSLYMHRQEHAPNKQSFTCSYCGKVFMKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACNSHVRTHSKETSFACLYCGQTFVQKSKLTYHIRKHTGEMLQLRIIENRLFTGGMSSPADRKYQDERYMLRHLRTSHTRAQHTCPLCHKLLTSAAGLRHHVLTHSAVNLFHCKCCPKSYAIKRTLLKHLRRRHGLNGTEINIKDFFRKLDPRECQLGLDETMISIFGPPKKLADIMLSDYAVFGSNLIKETGEETDDSGEEEAEKEYKYFDSIEAAEKREMDIENIEPYDENDTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -