Lcur030445.1
Basic Information
- Insect
- Lamproptera curius
- Gene Symbol
- -
- Assembly
- GCA_029286875.1
- Location
- JAGSMT010000220.1:292228-302127[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0059 0.94 11.3 1.4 1 23 589 611 589 611 0.99 2 11 0.0048 0.76 11.6 0.1 1 23 619 641 619 641 0.97 3 11 0.021 3.3 9.5 2.9 1 23 648 670 648 670 0.96 4 11 0.0011 0.17 13.6 5.4 1 23 676 698 676 698 0.99 5 11 0.00062 0.098 14.4 0.3 2 23 704 726 703 726 0.96 6 11 0.0002 0.031 16.0 0.7 2 23 731 752 730 752 0.95 7 11 2.4e-05 0.0037 18.8 1.3 1 23 758 780 758 780 0.99 8 11 0.00039 0.062 15.0 4.0 1 23 786 808 786 808 0.98 9 11 0.0014 0.23 13.2 6.5 1 23 814 836 814 836 0.99 10 11 0.00043 0.068 14.9 2.2 1 23 842 865 842 865 0.95 11 11 0.34 53 5.8 0.3 1 14 871 884 871 885 0.94
Sequence Information
- Coding Sequence
- atgtcttcacTCGAGTACACCCTCGCGGAAATAGGCCTCAACATAGAGGAATTTAAGGACAAGCCCGCGCATGAGACAATAGACGCCATCCGCGCCGCTATCGATGCCCGCAGAGGCATAAAATCGAAATCGAAAAAGTCTAAGCGGAAAGCCGCCAAATCCATGTCGTCCCGCGACACGACACCAACTACCACATCCGCGTCGGAGCAGTCGGAGGAGGACTCCGACACAATGACAGAGGACTCACCCGAGGACTCTTCCCCCACTCATTCgtccgaatccgaaatggatTTCGAGACAGAGACTGAAGCCAAAAACAACTGCGACACtgacgcaggaggcttcctTCCCATCAAGTCGCGCAAGAAGCGCAAGACTAGATCCCCCCCGGCGTCATCGCCGACCCCAGACCCACCAACcaaggcgccgaaatcgtcggccgccGAACTATCGGCCCCTAGGTCTATCGAAATTGCCccagccgcctcacggcaacaaCCTTCCGCTGCTTcgcagccggccgcatcacggccctcaacttcggctgcttcacagcaacccaCACCAGCTGCCTCACAGCAAACACCCGTCTCACTTCGAGACAAAAAACCGCCACCGATCTACATCAGATCAAAGGAAAAGTGGGCCGAAATACGGTCGGCCCTATCAAACCGTGTAAAGTTCACGGCAAACGATTCCGCCACCGGAATCAAGTTACAATTAGaaacggtgcaagcgcaccgtgATGTCACTAAGTATTTGCTCGAAAAGCAATACTATTATCACAcgttcgcgctcccggaagagcgcgtccttcggacagtggtcaaaggactgccgaaggaaaTACCTACTCAAGAGATCTTCGACTTCATTAAGTCGAAAAACATCCCCATCATttccgctcaaaggctgttccatccgcggacaaaaaagccttacaacgtcgtccttctgacgctcgaacgctctgtaGAGGGCAAAAAAGTATATGACCTAAAGCATATctgcgacattggtcgcataTCTTTTAACGCACCGCACTCAAGCGGCCTCCCAGGACAGTGTCATAACTGtcaattattcggacacacggcccgcaattgtcaCGCAAGACCAcgttgcgtaaagtgcctcgGTGACCACGGCACACCTGactgcccacgacctcgggaTCGCGAATCCCTTTCTACCTACGCTCCACCGGCATGTGTAAACTGCCAAAGTCaaggccacacggccaattatctAGGGTGCCCCAAAGCGCCCAAACGGAGACCACCTCCGCCATCCACCATCCCCAGGCGCCCACCGGCACCTGTACCATCTCTCTCCttcttcccgcccctccggcctgctccggcgtggcagatCCCCAGCGCACCGCGTAGCGctcccatgccagcgtggcatcaaccggccccgcaacctccaccgagcgctccgcgtagcgctgCACCATCAAACCccccgcgtagcgccgcaccaacaagcgctccgcgcaaCACCGCTCCACGCGCCGtaccaacaagcgctccgcgaagcgctccccagcaagctagccatagcaatggcagcactgggacAAACACCGACGTGTTAGTTAACACAGTAGACTTCGCTGAAGTCGATAGGCTTACCGCCGaactagatgccaccGACCCTTCTCTTTTTACAGTAGAAACCGACGAAACAGGAAGGTGTCTACAGACATTGATTGGAGGACAAAAGGCAAAGTCCCATTCAAGAAAAGGGACTATCATTTACAAGTGTGAAAAGTGCCCGGAGTCCTACCTGACCAGCAAAGCGCTGCACCTCCATGCAAGGAGCCATTTTGCGACCACCGAAGGGATTTTTAAGTGTGCCCTATGCCaaggcatatttaaaacaaatgaatcaTTGATAGAGCACAAGGCTGTCCATGCGAAAGAGGACTTACTCTTCACCTGCAACAAGTGCAAAGTGGCCTTCTCCAACCACCGCGACTACGTGTACCACGGACTCCGTCACTCCACCACCGACCTGTTCAAATGTTCGGAATGCCCCTCCACATACTACAGGAAGAAGAGCTTCCGACACCACATCTCCACCCACTACGAGAGGAAGGTCAAATGCCCGGATTGCGAGGAAATCTTCAAGCTGGAGAAGGACATGAACAGGCATAGACGGAACGTCCACATAAAAGGCACTCCCTGCGTCGAGTGTGGCAAGAGATGTCCCACGCGACGCGACCTCACCGAGCACATGGTCTCTCATACTGGTGTCAAGGTGTTCCAGTGCCTCTACTGCGGCAAGGGATTCTCCAGAGCAGCCTTAAGGCGAAGTCACACCAGAAAACACACGCTGTCAAACCCGTACGAGTGCCACATATGCTTCCAGAAGTTTAACGTAAAGAACAGCCTGAAACAGCACTACATAACCCATGAGAGTGAGAAGAGGTACGAATGCGACCATTGTGGCAAGCAGTTCTTCCATAGGAACAGCATGATCTATCACACGCGAAGGCACACTGGCCATTTGCTTTACAAGTGTCCGCTCTGCAAGCGCCAATTTGTCACATTCCAACAACTGACCCAACACACCGACTCGAAGCATTTGAAACAGAAGTTGTACAAGTGCGAGCTGTGCAGTGTGGATTTCTCCCGGAAGTCGGCTTAA
- Protein Sequence
- MSSLEYTLAEIGLNIEEFKDKPAHETIDAIRAAIDARRGIKSKSKKSKRKAAKSMSSRDTTPTTTSASEQSEEDSDTMTEDSPEDSSPTHSSESEMDFETETEAKNNCDTDAGGFLPIKSRKKRKTRSPPASSPTPDPPTKAPKSSAAELSAPRSIEIAPAASRQQPSAASQPAASRPSTSAASQQPTPAASQQTPVSLRDKKPPPIYIRSKEKWAEIRSALSNRVKFTANDSATGIKLQLETVQAHRDVTKYLLEKQYYYHTFALPEERVLRTVVKGLPKEIPTQEIFDFIKSKNIPIISAQRLFHPRTKKPYNVVLLTLERSVEGKKVYDLKHICDIGRISFNAPHSSGLPGQCHNCQLFGHTARNCHARPRCVKCLGDHGTPDCPRPRDRESLSTYAPPACVNCQSQGHTANYLGCPKAPKRRPPPPSTIPRRPPAPVPSLSFFPPLRPAPAWQIPSAPRSAPMPAWHQPAPQPPPSAPRSAAPSNPPRSAAPTSAPRNTAPRAVPTSAPRSAPQQASHSNGSTGTNTDVLVNTVDFAEVDRLTAELDATDPSLFTVETDETGRCLQTLIGGQKAKSHSRKGTIIYKCEKCPESYLTSKALHLHARSHFATTEGIFKCALCQGIFKTNESLIEHKAVHAKEDLLFTCNKCKVAFSNHRDYVYHGLRHSTTDLFKCSECPSTYYRKKSFRHHISTHYERKVKCPDCEEIFKLEKDMNRHRRNVHIKGTPCVECGKRCPTRRDLTEHMVSHTGVKVFQCLYCGKGFSRAALRRSHTRKHTLSNPYECHICFQKFNVKNSLKQHYITHESEKRYECDHCGKQFFHRNSMIYHTRRHTGHLLYKCPLCKRQFVTFQQLTQHTDSKHLKQKLYKCELCSVDFSRKSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -